Evidence map›Paper›PMID 32360491›Full record

ArticleHuman pathology2020

Proteomic analysis of transitional cell carcinoma-like variant of tubo-ovarian high-grade serous carcinoma.

Basile Tessier-Cloutier, Dawn R Cochrane, Anthony N Karnezis, Shane Colborne, Jamie Magrill, Aline Talhouk, Jonathan Zhang, Samuel Leung, Christopher S Hughes, Anna Piskorz and 11 more

Open access · greenAbstract read
In one paragraph

Article in Human pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 10 institutions in 4 countries.

Basile Tessier-CloutierDepartment of Pathology and Laboratory Medicine, The University of British Columbia, Vancouver, BC, Canada; Department of Molecular Oncology, BC Cancer, Vancouver, BC, Canada; Department of Pathology and Laboratory Medicine, Vancouver General Hospital, Vancouver, BC, Canada.
Dawn R CochraneDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Anthony N KarnezisDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada; Department of Pathology and Laboratory Medicine, UC Davis Medical Center, Sacramento, CA, United States.
Shane ColborneMichael Smith Genome Sciences Centre, BC Cancer, Vancouver, BC, Canada.
Jamie MagrillDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Aline TalhoukDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Jonathan ZhangDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Samuel LeungDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Christopher S HughesMichael Smith Genome Sciences Centre, BC Cancer, Vancouver, BC, Canada.
Anna PiskorzCancer Research UK Cambridge Research Institute, Li Ka Shing Centre, Cambridge, UK.
Angela S ChengGenetic Pathology Evaluation Centre, The University of British Columbia, Vancouver, Canada.
Kendall GreeningDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Andreas du BoisKliniken Essen Mitte, Essen, Germany.
Jacobus PfistererGynecologic Oncology Center, Kiel, Germany.
Robert A SoslowMemorial Sloan Kettering Cancer Center, New York, NY, United States.
Stefan KommossDepartment of Obstetrics and Gynecology, Tübingen University Hospital, Tübingen, Germany.
James D BrentonCancer Research UK Cambridge Research Institute, Li Ka Shing Centre, Cambridge, UK.
Gregg B MorinMichael Smith Genome Sciences Centre, BC Cancer, Vancouver, BC, Canada; Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.
C Blake GilksDepartment of Pathology and Laboratory Medicine, Vancouver General Hospital, Vancouver, BC, Canada.
David G HuntsmanDepartment of Molecular Oncology, BC Cancer, Vancouver, BC, Canada.
Friedrich KommossInstitute of Pathology, Medizin Campus Bodensee, Friedrichshafen, Germany. Electronic address: friedrich.kommoss@pathologie-fn.de.
University of British Columbia · CACanada's Michael Smith Genome Sciences Centre · CACancer Research UK Cambridge Center · GBClinical Research Center Kiel · DEKliniken Essen-Mitte · DEMedizin Campus Bodensee · DEMemorial Sloan Kettering Cancer Center · USUniversity Children's Hospital Tübingen · DEUniversity of California Davis Medical Center · USVancouver General Hospital · CA

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Cancer Research UK 15601Cancer Research UK 22905NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

The current World Health Organization classification does not distinguish transitional cell carcinoma of the ovary (TCC) from conventional tubo-ovarian high-grade serous carcinoma (HGSC), despite evidence suggesting improved prognosis for patients with TCC; instead, it is considered a morphologic variant of HGSC. The immunohistochemical (IHC) markers applied to date do not distinguish between TCC and HGSC. Therefore, we sought to compare the proteomic profiles of TCC and conventional HGSC to identify proteins enriched in TCC. Prognostic biomarkers in HGSC have proven to be elusive, and our aim was to identify biomarkers of TCC as a way of reliably and reproducibly identifying patients with a favorable prognosis and better response to chemotherapy compared with those with conventional HGSC. Quantitative global proteome analysis was performed on archival material of 12 cases of TCC and 16 cases of HGSC using SP3 (single-pot, solid phase-enhanced, sample preparation)-Clinical Tissue Proteomics, a recently described protocol for full-proteome analysis from formalin-fixed paraffin-embedded tissues. We identified 430 proteins that were significantly enriched in TCC over HGSC. Unsupervised co-clustering perfectly distinguished TCC from HGSC based on protein expression. Pathway analysis showed that proteins associated with cell death, necrosis, and apoptosis were highly expressed in TCCs, whereas proteins associated with DNA homologous recombination, cell mitosis, proliferation and survival, and cell cycle progression pathways had reduced expression. From the proteomic analysis, three potential biomarkers for TCC were identified, claudin-4 (CLDN4), ubiquitin carboxyl-terminal esterase L1 (UCHL1), and minichromosome maintenance protein 7 (MCM7), and tested by IHC analysis on tissue microarrays. In agreement with the proteomic analysis, IHC expression of those proteins was stronger in TCC than in HGSC (p < 0.0001). Using global proteomic analysis, we are able to distinguish TCC from conventional HGSC. Follow-up studies will be necessary to confirm that these molecular and morphologic differences are clinically significant.

Indexed as

Biomarkers, TumorCarcinoma, Transitional CellCystadenocarcinoma, SerousFallopian Tube NeoplasmsFemaleHumansOvarian NeoplasmsProteomicsBiomarkers, TumorFallopian tubesImmunohistochemistryLight microscopyMass spectrometryOvaryProteomicsSerous carcinoma

Identifiers

PMID32360491
PMCPMC8204941
OpenAlexW3022742848

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.