Evidence map›Paper›PMID 32359660›Full record

ArticleMethods in enzymology2020

Using the human CYP26A1 gene promoter as a suitable tool for the determination of RAR-mediated retinoid activity.

Reza Zolfaghari, Floyd J Mattie, Cheng-Hsin Wei, David R Chisholm, Andrew Whiting, A Catharine Ross

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Reza ZolfaghariDepartment of Nutritional Sciences, Pennsylvania State University, University Park, PA, United States. Electronic address: rxz7@psu.edu.
Floyd J MattieDepartment of Nutritional Sciences, Pennsylvania State University, University Park, PA, United States.
Cheng-Hsin WeiDepartment of Nutritional Sciences, Pennsylvania State University, University Park, PA, United States.
David R ChisholmCentre for Sustainable Chemical Processes, Department of Chemistry, Science Laboratories, Durham University, Durham, United Kingdom.
Andrew WhitingCentre for Sustainable Chemical Processes, Department of Chemistry, Science Laboratories, Durham University, Durham, United Kingdom.
A Catharine RossDepartment of Nutritional Sciences, Pennsylvania State University, University Park, PA, United States; Center for Molecular Immunology and Infectious Disease, Pennsylvania State University, University Park, PA, United States.
Pennsylvania State University · USDurham University · GB

Funding

Molecular Regulation of LRAT and CYP26 in Lung and LiverR01CA090214 · NCI · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI ROSS, A. CATHARINE · 2001 to 2012
$2.6M
NCI NIH HHS R01 CA090214
6 · The paper itself

Abstract

We have used a shortened construct form of the CYP26A1 gene promoter, in a promoter-less vector with either luciferase (known as E4) or a red fluorescent protein, RFP (known as E4.2) as the reporter gene and examined their responses to retinoids in transfected HepG2 and HEK293T cells. The promoter responded linearly to a wide concentration range of at-RA in cells cotransfected with retinoic acid receptors (RAR). The promoter also responded quantitatively to retinol and various other retinoids. An isolated clonal line of HEK293T cells that was permanently transfected with the promoter driving the expression of RFP responded to both at-RA and retinol, and the responses could be measured by fluorescence microscopy and flow cytometry. The promoter was also used to assess the retinoid activity of 3 novel synthetic retinoid analogues. Among them, EC23 was shown to be more potent than at-RA at lower concentrations and also more stable than at-RA. The promoter was also used to estimate the retinoid activities of intact rat serum samples as well as extracts of rat liver and lung, using retinol and at-RA as the reference standards. The retinoid activities could be measured in control rat serum samples and were increased in the serum of at-RA-treated rats. The total retinol and at-RA levels in the rat liver and lung samples determined by this promoter-based assay were compared with total retinol levels determined by the UPLC as the conventional methods. This system should offer a biologically-based alternative to mass-based retinoid analysis.

Indexed as

Receptors, Retinoic AcidRetinoidsAnimalsHEK293 CellsHumansPromoter Regions, GeneticRatsRetinoic Acid 4-HydroxylaseCYP26A1 protein, humanReceptors, Retinoic AcidRetinoic Acid 4-HydroxylaseRetinoidsCYP26A1 promoterLuciferasemCherryRed fluorescence protein (RFP)Retinoic acid assayRetinoid receptor activity

Identifiers

PMID32359660
PMCPMC9440639
OpenAlexW3015296570

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.