Evidence map›Paper›PMID 32359472›Full record

ArticleAmerican journal of human genetics2020

Analysis of U8 snoRNA Variants in Zebrafish Reveals How Bi-allelic Variants Cause Leukoencephalopathy with Calcifications and Cysts.

Andrew P Badrock, Carolina Uggenti, Ludivine Wacheul, Siobhan Crilly, Emma M Jenkinson, Gillian I Rice, Paul R Kasher, Denis L J Lafontaine, Yanick J Crow, Raymond T O'Keefe

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. The zebrafish (NAR genomics and bioinformatics · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. In phase with the nucleolus.Cell research · 2023
    Article
  13. Article
  14. Article
  15. Characterization of a mutantFrontiers in immunology · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Andrew P BadrockCentre for Genomic and Experimental Medicine, Medical Research Council Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK. Electronic address: andrew.badrock@igmm.ed.ac.uk.
Carolina UggentiCentre for Genomic and Experimental Medicine, Medical Research Council Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK; Université de Paris, Paris, France; Laboratory of Neurogenetics and Neuroinflammation, Institut Imagine, Paris, France.
Ludivine WacheulRNA Molecular Biology, ULB Cancer Research Center (U-CRC), Center for Microscopy and Molecular Imaging (CMMI), Fonds de la Recherche Scientifique (F.R.S.-FNRS), Université Libre de Bruxelles (ULB), BioPark Campus, B-6041, Gosselies, Belgium.
Siobhan CrillyDivision of Neuroscience and Experimental Psychology, Faculty of Biology, Medicine and Health, Manchester Academic Health Science Centre, The University of Manchester, Manchester, M13 9PT, UK.
Emma M JenkinsonDivision of Evolution and Genomic Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, M13 9PT, UK.
Gillian I RiceDivision of Evolution and Genomic Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, M13 9PT, UK.
Paul R KasherDivision of Neuroscience and Experimental Psychology, Faculty of Biology, Medicine and Health, Manchester Academic Health Science Centre, The University of Manchester, Manchester, M13 9PT, UK.
Denis L J LafontaineRNA Molecular Biology, ULB Cancer Research Center (U-CRC), Center for Microscopy and Molecular Imaging (CMMI), Fonds de la Recherche Scientifique (F.R.S.-FNRS), Université Libre de Bruxelles (ULB), BioPark Campus, B-6041, Gosselies, Belgium.
Yanick J CrowCentre for Genomic and Experimental Medicine, Medical Research Council Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK; Université de Paris, Paris, France; Laboratory of Neurogenetics and Neuroinflammation, Institut Imagine, Paris, France.
Raymond T O'KeefeDivision of Evolution and Genomic Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, M13 9PT, UK. Electronic address: rokeefe@manchester.ac.uk.
University of Manchester · GBUniversité Libre de Bruxelles · BEInstitut des Maladies Génétiques Imagine · FRManchester Academic Health Science Centre · GBMedical Research Council · GBMRC Institute of Genetics and Molecular Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

How mutations in the non-coding U8 snoRNA cause the neurological disorder leukoencephalopathy with calcifications and cysts (LCC) is poorly understood. Here, we report the generation of a mutant U8 animal model for interrogating LCC-associated pathology. Mutant U8 zebrafish exhibit defective central nervous system development, a disturbance of ribosomal RNA (rRNA) biogenesis and tp53 activation, which monitors ribosome biogenesis. Further, we demonstrate that fibroblasts from individuals with LCC are defective in rRNA processing. Human precursor-U8 (pre-U8) containing a 3' extension rescued mutant U8 zebrafish, and this result indicates conserved biological function. Analysis of LCC-associated U8 mutations in zebrafish revealed that one null and one functional allele contribute to LCC. We show that mutations in three nucleotides at the 5' end of pre-U8 alter the processing of the 3' extension, and we identify a previously unknown base-pairing interaction between the 5' end and the 3' extension of human pre-U8. Indeed, LCC-associated mutations in any one of seven nucleotides in the 5' end and 3' extension alter the processing of pre-U8, and these mutations are present on a single allele in almost all individuals with LCC identified to date. Given genetic data indicating that bi-allelic null U8 alleles are likely incompatible with human development, and that LCC is not caused by haploinsufficiency, the identification of hypomorphic misprocessing mutations that mediate viable embryogenesis furthers our understanding of LCC molecular pathology and cerebral vascular homeostasis.

Indexed as

AllelesMutationAnimalsBase SequenceCalcinosisCentral Nervous System CystsConserved SequenceCystsDisease Models, AnimalEmbryonic DevelopmentHumansLeukoencephalopathiesRNA, Small NucleolarTumor Suppressor Protein p53ZebrafishZebrafish ProteinsRNA, Small Nucleolartp53 protein, zebrafishTumor Suppressor Protein p53Zebrafish ProteinsLabrune syndromeleukoencephalopathy with calcifications and cystsribosomopathySNORD118snoRNAU8 snoRNAzebrafish

Identifiers

PMID32359472
PMCPMC7212298
OpenAlexW3021215334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.