Evidence map›Paper›PMID 32356524›Full record

ArticleActa crystallographica. Section F, Structural biology communications2020

Characterization of the Pseudomonas aeruginosa T6SS PldB immunity proteins PA5086, PA5087 and PA5088 explains a novel stockpiling mechanism.

Haiying Wen, Zhi Geng, Zengqiang Gao, Zhun She, Yuhui Dong

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Haiying WenSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, People's Republic of China.
Zhi GengMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, People's Republic of China.
Zengqiang GaoMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, People's Republic of China.
Zhun SheMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, People's Republic of China.
Yuhui DongMultidiscipline Research Center, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, People's Republic of China.ORCID 0000-0002-4422-4685
Chinese Academy of Sciences · CNUniversity of Science and Technology of China · CN

Funding

Beijing Municipal Science and Technology Commission Z191100007219007National Basic Research Program of China (973 Program) 2017YFA0504900National Natural Science Foundation of China 31700651
6 · The paper itself

Abstract

The bacterial type VI secretion system (T6SS) secretes many toxic effectors to gain advantage in interbacterial competition and for eukaryotic host infection. The cognate immunity proteins of these effectors protect bacteria from their own effectors. PldB is a T6SS trans-kingdom effector in Pseudomonas aeruginosa that can infect both prokaryotic and eukaryotic cells. Three proteins, PA5086, PA5087 and PA5088, are employed to suppress the toxicity of PldB-family proteins. The structures of PA5087 and PA5088 have previously been reported, but the identification of further distinctions between these immunity proteins is needed. Here, the crystal structure of PA5086 is reported at 1.90 Å resolution. A structural comparison of the three PldB immunity proteins showed vast divergences in their electrostatic potential surfaces. This interesting phenomenon provides an explanation of the stockpiling mechanism of T6SS immunity proteins.

Indexed as

Amino Acid SequenceBacterial ProteinsCrystallography, X-RayModels, MolecularProtein Conformation, alpha-HelicalPseudomonas aeruginosaRecombinant ProteinsSequence AlignmentStatic ElectricityType VI Secretion SystemsBacterial ProteinsRecombinant ProteinsType VI Secretion Systemselectrostatic potential surfacePA5086Pseudomonas aeruginosastockpiling mechanismT6SS immunity proteinstype VI secretion systemX-ray crystallography

Identifiers

PMID32356524
PMCPMC7193511
OpenAlexW3021183067

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.