Evidence map›Paper›PMID 32355568›Full record

ArticleVirus evolution2020

Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host.

Brittany RifeMagalis, Samantha L Strickland, Stephen D Shank, Patrick Autissier, Alexandra Schuetz, Pasiri Sithinamsuwan, Sukalaya Lerdlum, James L K Fletcher, Mark de Souza, Jintanat Ananworanich and 6 more

Abstract read
In one paragraph

Article in Virus evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Brittany RifeMagalisDepartment of Pathology, Immunology, and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, Gainesville, FL 32601, USA.ORCID 0000-0001-6088-4651
Samantha L StricklandDepartment of Pathology, Immunology, and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, Gainesville, FL 32601, USA.
Stephen D ShankDepartment of Biology, Temple University, Philadelphia, PA 19122, USA.
Patrick AutissierDepartment of Biology, Boston College, Chestnut Hill, MA 02467, USA.
Alexandra SchuetzDepartment of Retrovirology, Armed Forces Research Institute of Medical Sciences - United States Component, Bangkok 10400, Thailand.
Pasiri SithinamsuwanU.S. Military HIV Research Program, Walter Reed Army Institute of Research, Rockville, MD 20850, USA.
Sukalaya LerdlumDivision of Neurology, Department of Medicine, Phramongkutklao Hospital, Bangkok 10400, Thailand.
James L K FletcherFaculty of Medicine, Department of Radiology, Chulalongkorn University, Bangkok 10330, Thailand.
Mark de SouzaFaculty of Medicine, Department of Radiology, Chulalongkorn University, Bangkok 10330, Thailand.
Jintanat AnanworanichDepartment of Retrovirology, Armed Forces Research Institute of Medical Sciences - United States Component, Bangkok 10400, Thailand.
Victor ValcourDepartment of Neurology, University of California San Francisco, San Francisco, CA 94143, USA.
Search007 Study Group
Kenneth C WilliamsDepartment of Biology, Boston College, Chestnut Hill, MA 02467, USA.
Sergei L Kosakovsky PondDepartment of Biology, Temple University, Philadelphia, PA 19122, USA.
Silvia RattoKimDepartment of Retrovirology, Armed Forces Research Institute of Medical Sciences - United States Component, Bangkok 10400, Thailand.
Marco SalemiDepartment of Pathology, Immunology, and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, Gainesville, FL 32601, USA.

Funding

Viral evolution in peropheral macrophages and brain during progression to AIDSR01NS063897 · NINDS · UNIVERSITY OF FLORIDA · PI SALEMI, MARCO · 2009 to 2021
$7.0M
Turning big data analysis infrastructure for HIV researchR01AI134384 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI NEKRUTENKO, ANTON, POND, SERGEI L KOSAKOVSKY · 2017 to 2021
$4.2M
Modeling Epidemic Infectious Diseases Using Sequence AnalysisU01GM110749 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POND, SERGEI L KOSAKOVSKY · 2014 to 2018
$3.0M
HyPhy: Molecular Evolutionary AnalysesR01GM093939 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI MUSE, SPENCER V., POND, SERGEI L KOSAKOVSKY · 2010 to 2018
$2.5M
HIV-1 Specific Immune Responses in Thai Individuals with HIV DementiaR01NS053359 · NINDS · UNIVERSITY OF HAWAII AT MANOA · PI KIM, SILVIA R · 2007 to 2011
$1.6M
Intra-Host Phylogeography and Population Dynamics of SIV in the Rhesus Macaque Model of NeuroAIDSF31MH109398 · NIMH · UNIVERSITY OF FLORIDA · PI MAGALIS, BRITTANY · 2016 to 2016
$37k
NIAID NIH HHS R01 AI134384NIGMS NIH HHS R01 GM093939NIGMS NIH HHS U01 GM110749NIMH NIH HHS F31 MH109398NINDS NIH HHS R01 NS053359NINDS NIH HHS R01 NS063897
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) is a rapidly evolving virus, allowing its genetic sequence to act as a fingerprint for epidemiological processes among, as well as within, individual infected hosts. Though primarily infecting the CD4+ T-cell population, HIV can also be found in monocytes, an immune cell population that differs in several aspects from the canonical T-cell viral target. Using single genome viral sequencing and statistical phylogenetic inference, we investigated the viral RNA diversity and relative contribution of each of these immune cell types to the viral population within the peripheral blood. Results provide evidence of an increased prevalence of circulating monocytes harboring virus in individuals with high viral load in the absence of suppressive antiretroviral therapy. Bayesian phyloanatomic analysis of three of these individuals demonstrated a measurable role for these cells, but not the circulating T-cell population, as a source of cell-free virus in the plasma, supporting the hypothesis that these cells can act as an additional conduit of virus spread.

Indexed as

evolutionHIVmonocytephyloanatomyT cell

Identifiers

PMID32355568
PMCPMC7185683

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.