Evidence map›Paper›PMID 32355196›Full record

ArticleScientific reports2020

The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water.

Vladimir Belosludov, Kirill Gets, Ravil Zhdanov, Valery Malinovsky, Yulia Bozhko, Rodion Belosludov, Nikolay Surovtsev, Oleg Subbotin, Yoshiyuki Kawazoe

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Rotational dive into the water clusters on a simple sugar substrate.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vladimir BelosludovDepartment of Physics, Novosibirsk State University, 630090, Novosibirsk, Russia. bel@niic.nsc.ru.ORCID http://orcid.org/0000-0002-4245-5180
Kirill GetsDepartment of Physics, Novosibirsk State University, 630090, Novosibirsk, Russia. gets@niic.nsc.ru.ORCID http://orcid.org/0000-0003-2452-5170
Ravil ZhdanovDepartment of Physics, Novosibirsk State University, 630090, Novosibirsk, Russia.ORCID http://orcid.org/0000-0002-0464-9435
Valery MalinovskyInstitute of Automation and Electrometry SB RAS, 630090, Novosibirsk, Russia.
Yulia BozhkoDepartment of Physics, Novosibirsk State University, 630090, Novosibirsk, Russia.ORCID http://orcid.org/0000-0002-5754-3976
Rodion BelosludovInstitute for Materials Research, Tohoku University, 980-8577, Sendai, Japan.
Nikolay SurovtsevInstitute of Automation and Electrometry SB RAS, 630090, Novosibirsk, Russia.
Oleg SubbotinDepartment of Physics, Novosibirsk State University, 630090, Novosibirsk, Russia.
Yoshiyuki KawazoeNew Industry Creation Hatchery Center, Tohoku University, 980-8579, Sendai, Japan.

Funding

Ministry of Education, Culture, Sports, Science and Technology (MEXT) 17H03122Ministry of Education, Culture, Sports, Science and Technology (MEXT) hp140159Russian Science Foundation (RSF) 18-19-00124
6 · The paper itself

Abstract

A method for studying the time dependence of the short-range molecular order of water has been proposed. In the present study, water is considered as a dynamic network between molecules at distances not exceeding 3.2 Å. The instantaneous configurations obtained with the molecular dynamics method have been sequentially analyzed. The mutual orientation of each molecule with its neighboring molecules has been studied and the interaction energy of each pair of neighbor molecules has been calculated. The majority of mutual orientation angles between molecules lie in the interval [0°; 20°]. More than 85% of the molecular pairs in each instantaneous configuration form H-bonds and the H-bond network includes all water molecules in the temperature range 233-293 K. The number of H-bonds fluctuates near the mean value and increases with decreasing temperature, and the energy of the vast majority of such bonds is much higher than the thermal energy. The interaction energy of 80% of the H-bonding molecular pairs lies in the interval [-7; -4] kcal/mol. The interaction energy of pairs that do not satisfy the H-bond angle criterion lies in the interval [-5; 4] kcal/mol; the number of such bonds does not exceed 15% and decreases with decreasing temperature. For the first time it has been found that in each instantaneous configuration the H-bond network contains built-in nanometric structural heterogeneities formed by shorter H-bonds. The fraction of molecules involved in the structural heterogeneities increases from 40% to 60% with a temperature decrease from 293 K to 233 K. Each heterogeneity has a finite lifetime and changeable structure, but they are constantly present during the entire simulation time.

Identifiers

PMID32355196
PMCPMC7192952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.