Evidence map›Paper›PMID 32353031›Full record

ArticlePloS one2020

Cytokinin biosynthesis genes expressed during nodule organogenesis are directly regulated by the KNOX3 protein in Medicago truncatula.

Mahboobeh Azarakhsh, Andrey M Rumyantsev, Maria A Lebedeva, Lyudmila A Lutova

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

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  6. Seed Germination Mechanism ofFrontiers in plant science · 2022
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  7. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Mahboobeh AzarakhshDepartment of Genetics and Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.
Andrey M RumyantsevDepartment of Genetics and Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.
Maria A LebedevaDepartment of Genetics and Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.ORCID 0000-0002-6412-7401
Lyudmila A LutovaDepartment of Genetics and Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.
St Petersburg University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytokinin is an important regulator of symbiotic nodule development. Recently, KNOTTED1-LIKE HOMEOBOX 3 transcription factor (TF) was shown to regulate symbiotic nodule development possibly via the activation of cytokinin biosynthesis genes. However, the direct interaction between the KNOX3 TF and its target genes has not been investigated up to date. Here, using EMSA analysis and SPR-based assay, we found that MtKNOX3 homeodomain directly binds to the regulatory sequences of the MtLOG1, MtLOG2, and MtIPT3 genes involved in nodulation in Medicago truncatula. Moreover, we showed that MtLOG2 and MtIPT3 expression patterns partially overlap with MtKNOX3 expression in developing nodules as it was shown by promoter:GUS analysis. Our data suggest that MtKNOX3 TF may directly activate the MtLOG1, MtLOG2, and MtIPT3 genes during nodulation thereby increasing cytokinin biosynthesis in developing nodules.

Indexed as

Gene Expression Regulation, PlantCytokininsGene Expression Regulation, DevelopmentalHomeodomain ProteinsMedicago truncatulaPlant ProteinsPromoter Regions, GeneticTranscription FactorsCytokininsHomeodomain ProteinsPlant ProteinsTranscription Factors

Identifiers

PMID32353031
PMCPMC7192382
OpenAlexW3020937900

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.