Evidence map›Paper›PMID 32352996›Full record

ArticlePloS one2020

Tunable self-cleaving ribozymes for modulating gene expression in eukaryotic systems.

Thomas Jacobsen, Gloria Yi, Hadel Al Asafen, Ashley A Jermusyk, Chase L Beisel, Gregory T Reeves

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Thomas JacobsenDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States of America.
Gloria YiDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States of America.
Hadel Al AsafenDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States of America.
Ashley A JermusykDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States of America.
Chase L BeiselDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States of America.
Gregory T ReevesDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States of America.ORCID 0000-0003-0836-7766
North Carolina State University · US

Funding

DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
NIH HHS P40 OD010949
6 · The paper itself

Abstract

Advancements in the field of synthetic biology have been possible due to the development of genetic tools that are able to regulate gene expression. However, the current toolbox of gene regulatory tools for eukaryotic systems have been outpaced by those developed for simple, single-celled systems. Here, we engineered a set of gene regulatory tools by combining self-cleaving ribozymes with various upstream competing sequences that were designed to disrupt ribozyme self-cleavage. As a proof-of-concept, we were able to modulate GFP expression in mammalian cells, and then showed the feasibility of these tools in Drosophila embryos. For each system, the fold-reduction of gene expression was influenced by the location of the self-cleaving ribozyme/upstream competing sequence (i.e. 5' vs. 3' untranslated region) and the competing sequence used. Together, this work provides a set of genetic tools that can be used to tune gene expression across various eukaryotic systems.

Indexed as

AnimalsDrosophilaEukaryotaEukaryotic CellsGene ExpressionGene Expression RegulationGenetic EngineeringNucleic Acid ConformationProof of Concept StudyRNA, CatalyticRNA, MessengerSynthetic BiologyRNA, CatalyticRNA, Messenger

Identifiers

PMID32352996
PMCPMC7192461
OpenAlexW3023411197

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.