Evidence map›Paper›PMID 32349680›Full record

ArticleBMC genomics2020

Transcriptomic analysis of flower induction for long-day pitaya by supplementary lighting in short-day winter season.

Rui Xiong, Chengli Liu, Min Xu, Shuang-Shuang Wei, Jia-Quan Huang, Hua Tang

Abstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Pitaya Nutrition, Biology, and Biotechnology: A Review.International journal of molecular sciences · 2023
    Review
  9. De Novo Transcriptome ofPlants (Basel, Switzerland) · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Transcriptome Analysis ofFrontiers in plant science · 2021
    Article
  14. Floral Induction of Longan (Frontiers in plant science · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rui XiongHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No. 58 Renmin Avenue, Haikou, 570228, Hainan, P. R. China.
Chengli LiuHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No. 58 Renmin Avenue, Haikou, 570228, Hainan, P. R. China.
Min XuHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No. 58 Renmin Avenue, Haikou, 570228, Hainan, P. R. China.
Shuang-Shuang WeiHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No. 58 Renmin Avenue, Haikou, 570228, Hainan, P. R. China.
Jia-Quan HuangHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No. 58 Renmin Avenue, Haikou, 570228, Hainan, P. R. China.
Hua TangHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No. 58 Renmin Avenue, Haikou, 570228, Hainan, P. R. China. thtiger@163.com.ORCID http://orcid.org/0000-0001-9891-1694

Funding

the Construction of World First Class Discipline of Hainan University RZZX201904the National Pitaya Breeding Joint Project from the Ministry of Agriculture and Rural Affairs of China HD-KYH-2019042the Species and Varieties Resources Protection Project of the Ministry of Agriculture and Rural Affairs of China 18190033-1
6 · The paper itself

Abstract

backgroundPitayas are currently attracting considerable interest as a tropical fruit with numerous health benefits. However, as a long-day plant, pitaya plants cannot flower in the winter season from November to April in Hainan, China. To harvest pitayas with high economic value in the winter season, it is necessary to provide supplementary lighting at night to induce flowering. To further explore the molecular regulating mechanisms of flower induction in pitaya plants exposed to supplementary lighting, we used de novo RNA sequencing-based transcriptomic analysis for four stages of pitaya plants subjected to light induction.

resultsWe assembled 68,113 unigenes in total, comprising 29,782 unigenes with functional annotations in the NR database, 20,716 annotations in SwissProt, 18,088 annotations in KOG, and 11,059 annotations in KEGG. Comparisons between different samples revealed different numbers of significantly differentially expressed genes (DEGs). A number of DEGs involved in energy metabolism-related processes and plant hormone signaling were detected. Moreover, we identified many CONSTANS-LIKE, FLOWERING LOCUS T, and other DEGs involved in the direct regulation of flowering including CDF and TCP, which function as typical transcription factor genes in the flowering process. At the transcriptomic level, we verified 13 DEGs with different functions in the time-course response to light-induced flowering by quantitative reverse-transcription PCR analysis.

conclusionsThe identified DEGs may include some key genes controlling the pitaya floral-induction network, the flower induction and development is very complicated, and it involves photoperiod perception and different phytohormone signaling. These findings will increase our understanding to the molecular mechanism of floral regulation of long-day pitaya plants in short-day winter season induced by supplementary lighting.

Indexed as

CactaceaeFlowersGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantLightPhotoperiodPlant DevelopmentPlant Growth RegulatorsPlant StructuresSeasonsTranscription FactorsPlant Growth RegulatorsTranscription Factorsde novo RNA-Seq analysisDifferentially expressed genesPitayaqRT-PCRSupplementary lighting-induced flowering

Identifiers

PMID32349680
PMCPMC7191803

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.