Evidence map›Paper›PMID 32348749›Full record

ArticleStructure (London, England : 1993)2020

Interactions of a Bacterial RND Transporter with a Transmembrane Small Protein in a Lipid Environment.

Dijun Du, Arthur Neuberger, Mona Wu Orr, Catherine E Newman, Pin-Chia Hsu, Firdaus Samsudin, Andrzej Szewczak-Harris, Leana M Ramos, Mekdes Debela, Syma Khalid and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A surface-exposed cardiolipin synthase provides an unexpected paradigm for maintaining the Gram-negative outer membrane.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Eukaryotic Microproteins.Annual review of biochemistry · 2025
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Large Roles of Small Proteins.Annual review of microbiology · 2024
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Dijun DuDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK. Electronic address: dudj@shanghaitech.edu.cn.
Arthur NeubergerDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK.
Mona Wu OrrDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892-4417, USA.
Catherine E NewmanDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK.
Pin-Chia HsuSchool of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.
Firdaus SamsudinSchool of Chemistry, University of Southampton, Southampton SO17 1BJ, UK.
Andrzej Szewczak-HarrisDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK.
Leana M RamosDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892-4417, USA.
Mekdes DebelaDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK.
Syma KhalidSchool of Chemistry, University of Southampton, Southampton SO17 1BJ, UK. Electronic address: s.khalid@soton.ac.uk.
Gisela StorzDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892-4417, USA. Electronic address: storzg@mail.nih.gov.
Ben F LuisiDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK. Electronic address: bfl20@cam.ac.uk.
University of Cambridge · GBEunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of Southampton · GB

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Small Regulatory ProteinsZIAHD008855 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI STORZ, GISELA · 2009 to 2025
$16.3M
NIGMS NIH HHS T32 GM007753Wellcome Trust
6 · The paper itself

Abstract

The small protein AcrZ in Escherichia coli interacts with the transmembrane portion of the multidrug efflux pump AcrB and increases resistance of the bacterium to a subset of the antibiotic substrates of that transporter. It is not clear how the physical association of the two proteins selectively changes activity of the pump for defined substrates. Here, we report cryo-EM structures of AcrB and the AcrBZ complex in lipid environments, and comparisons suggest that conformational changes occur in the drug-binding pocket as a result of AcrZ binding. Simulations indicate that cardiolipin preferentially interacts with the AcrBZ complex, due to increased contact surface, and we observe that chloramphenicol sensitivity of bacteria lacking AcrZ is exacerbated when combined with cardiolipin deficiency. Taken together, the data suggest that AcrZ and lipid cooperate to allosterically modulate AcrB activity. This mode of regulation by a small protein and lipid may occur for other membrane proteins.

Indexed as

Allosteric RegulationATP-Binding Cassette, Sub-Family C ProteinsBinding SitesCardiolipinsCarrier ProteinsChloramphenicolCryoelectron MicroscopyCrystallography, X-RayDrug Resistance, BacterialEscherichia coliEscherichia coli ProteinsModels, MolecularMultiprotein ComplexesProtein BindingProtein ConformationSubstrate SpecificityAcrB protein, E coliAcrZ protein, E coliATP-Binding Cassette, Sub-Family C ProteinsCardiolipinsCarrier ProteinsChloramphenicolEscherichia coli ProteinsMultiprotein ComplexesallosteryantibioticcryoEMdrug effluxmolecular dynamicssmall proteinstructural modeltransmembrane transport

Identifiers

PMID32348749
PMCPMC7267776
OpenAlexW3017575288

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.