Evidence map›Paper›PMID 32348179›Full record

ArticleAmerican journal of physiology. Cell physiology2020

Hepatocyte nuclear factor-4α regulates expression of the serotonin transporter in intestinal epithelial cells.

Nathaniel W Holton, Megha Singhal, Anoop Kumar, Alexander L Ticho, Christopher R Manzella, Pooja Malhotra, David Jarava, Seema Saksena, Pradeep K Dudeja, Waddah A Alrefai and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Cell physiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Recombinant proteinWorld journal of gastroenterology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Nathaniel W HoltonDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Megha SinghalDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Anoop KumarDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Alexander L TichoDepartment of Physiology and Biophysics, University of Illinois at Chicago, Chicago, Illinois.
Christopher R ManzellaDepartment of Physiology and Biophysics, University of Illinois at Chicago, Chicago, Illinois.
Pooja MalhotraDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
David JaravaDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Seema SaksenaDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Pradeep K DudejaDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Waddah A AlrefaiDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
Ravinder K GillDivision of Gastroenterology and Hepatology, University of Illinois at Chicago, Chicago, Illinois.
University of Illinois Chicago · US

Funding

Intestinal Anion Transporters: Function and RegulationR01DK054016 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDEJA, PRADEEP K · 1998 to 2022
$7.0M
Transporter Trafficking Mechanisms in Infectious DiarrheaR01DK092441 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDEJA, PRADEEP K · 2011 to 2020
$3.0M
Intestinal 5-HT Transporter: A novel therapeutic target for GI disordersR01DK098170 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI GILL, RAVINDER K · 2014 to 2022
$3.0M
Probiotics:Potential Therapeutic Roles in DiarrheaR01DK081858 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDEJA, PRADEEP K · 2008 to 2017
$2.5M
Gut-liver crosstalk in bile-acid induced diarrheaR01DK109709 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALREFAI, WADDAH A. · 2016 to 2019
$1.1M
Epigenetic regulation of bile acids in health and diseaseF30DK117535 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI TICHO, ALEXANDER LOUIS · 2018 to 2020
$150k
BLR&D Research Career Scientist Award ApplicationIK6BX005242 · VA · JESSE BROWN VA MEDICAL CENTER · PI Pradeep K Dudeja · 2020 to 2026
–
A Novel Role of DRA in IBD PathogenesisIK2BX004719 · VA · JESSE BROWN VA MEDICAL CENTER · PI KUMAR, ANOOP · 2019 to 2023
–
Regulation of Intestinal Sodium Absorption in Health and DiseaseI01BX002867 · VA · JESSE BROWN VA MEDICAL CENTER · PI Seema Saksena · 2016 to 2026
–
Mechanisms of Regulation of Intestinal Cl Absorption in IBD Associated DiarrheaI01BX002011 · VA · JESSE BROWN VA MEDICAL CENTER · PI DUDEJA, PRADEEP K · 2013 to 2024
–
BLRD VA I01 BX000152BLRD VA I01 BX002011BLRD VA I01 BX002867BLRD VA IK2 BX004719NIDDK NIH HHS F30 DK117535NIDDK NIH HHS R01 DK054016NIDDK NIH HHS R01 DK081858NIDDK NIH HHS R01 DK092441NIDDK NIH HHS R01 DK098170NIDDK NIH HHS R01 DK109709
6 · The paper itself

Abstract

The serotonin transporter (SERT) functions to regulate the availability of serotonin (5-HT) in the brain and intestine. An intestine-specific mRNA variant arising from a unique transcription start site and alternative promoter in the SERT gene has been identified (iSERT; spanning exon 1C). A decrease in SERT is implicated in several gut disorders, including inflammatory bowel diseases (IBD). However, little is known about mechanisms regulating the iSERT variant, and a clearer understanding is warranted for targeting SERT for the treatment of gut disorders. The current studies examined the expression of iSERT across different human intestinal regions and investigated its regulation by HNF4α (hepatic nuclear factor-4α), a transcription factor important for diverse cellular functions. iSERT mRNA abundance was highest in the human ileum and Caco-2 cell line. iSERT mRNA expression was downregulated by loss of HNF4α (but not HNF1α, HNF1β, or FOXA1) in Caco-2 cells. Overexpression of HNF4α increased iSERT mRNA concomitant with an increase in SERT protein. Progressive promoter deletion and site-directed mutagenesis revealed that the HNF4α response element spans nucleotides -1,163 to -1150 relative to the translation start site. SERT mRNA levels in the intestine were drastically reduced in the intestine-specific HNF4α-knockout mice relative to HNF4α

Indexed as

AnimalsCaco-2 CellsDisease Models, AnimalEpithelial CellsHepatocyte Nuclear Factor 4HumansIleitisIleumIntestinal MucosaMaleMice, KnockoutPromoter Regions, GeneticResponse ElementsSerotonin Plasma Membrane Transport ProteinsTranscription, GeneticHepatocyte Nuclear Factor 4HNF4A protein, humanHnf4a protein, mouseSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, humanSlc6a4 protein, mouseepithelial transportHNFileitisSERT transcriptional regulationspontaneous animal model of IBD

Identifiers

PMID32348179
PMCPMC7311735
OpenAlexW3020299727

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.