Evidence map›Paper›PMID 32347666›Full record

ArticleMolecular informatics2020

Parallel Generative Topographic Mapping: An Efficient Approach for Big Data Handling.

Arkadii Lin, Igor I Baskin, Gilles Marcou, Dragos Horvath, Bernd Beck, Alexandre Varnek

Abstract read
In one paragraph

Article in Molecular informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Evaluation of the Topology Space of DNA-Encoded Libraries.Journal of chemical information and modeling · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Arkadii LinUniversity of Strasbourg, Laboratory of Chemoinformatics, Faculty of Chemistry, 4, Blaise Pascal str., 67081, Strasbourg, France.
Igor I BaskinFaculty of Physics, Lomonosov Moscow State University, 1/2, Leninskie Gory str., 119991, Moscow, Russia.
Gilles MarcouUniversity of Strasbourg, Laboratory of Chemoinformatics, Faculty of Chemistry, 4, Blaise Pascal str., 67081, Strasbourg, France.
Dragos HorvathUniversity of Strasbourg, Laboratory of Chemoinformatics, Faculty of Chemistry, 4, Blaise Pascal str., 67081, Strasbourg, France.
Bernd BeckDepartment of Medicinal Chemistry, Boehringer Ingelheim Pharma GmbH & Co. KG, 65, Birkendorfer str., 88397, Biberach an der Riss, Germany.
Alexandre VarnekUniversity of Strasbourg, Laboratory of Chemoinformatics, Faculty of Chemistry, 4, Blaise Pascal str., 67081, Strasbourg, France.ORCID 0000-0003-1886-925X

Funding

European Union's Horizon 2020 research and innovation programMarie Skłodowska-Curie Grant 676434
6 · The paper itself

Abstract

Generative Topographic Mapping (GTM) can be efficiently used to visualize, analyze and model large chemical data. The GTM manifold needs to span the chemical space deemed relevant for a given problem. Therefore, the Frame set (FS) of compounds used for the manifold construction must well cover a given chemical space. Intuitively, the FS size must raise with the size and diversity of the target library. At the same time, the GTM training can be very slow or even becomes technically impossible at FS sizes of the order of 10

Indexed as

AlgorithmsBig DataDatabases, ChemicalEntropyBig DataChEMBLFrame setParallel Generative Topographic Mapping

Identifiers

PMID32347666
PMCPMC7757192

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.