Evidence map›Paper›PMID 32346058›Full record

ArticleCommunications biology2020

The challenge of intracellular antibiotic accumulation, a function of fluoroquinolone influx versus bacterial efflux.

Julia Vergalli, Alessio Atzori, Jelena Pajovic, Estelle Dumont, Giuliano Malloci, Muriel Masi, Attilio Vittorio Vargiu, Mathias Winterhalter, Matthieu Réfrégiers, Paolo Ruggerone and 1 more

Abstract readComparative Study
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  18. International journal of molecular sciences · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Julia Vergalli *UMR_MD1, U-1261, Aix-Marseille University, INSERM, IRBA, MCT, Marseille, France.
Alessio Atzori *Department of Physics, University of Cagliari, 09042, Monserrato, CA, Italy.
Jelena PajovicDISCO beamline, Synchrotron Soleil, Saint-Aubin, France.
Estelle DumontUMR_MD1, U-1261, Aix-Marseille University, INSERM, IRBA, MCT, Marseille, France.
Giuliano MallociDepartment of Physics, University of Cagliari, 09042, Monserrato, CA, Italy.ORCID http://orcid.org/0000-0002-5985-257X
Muriel MasiUMR_MD1, U-1261, Aix-Marseille University, INSERM, IRBA, MCT, Marseille, France.
Attilio Vittorio VargiuDepartment of Physics, University of Cagliari, 09042, Monserrato, CA, Italy.ORCID http://orcid.org/0000-0003-4013-8867
Mathias WinterhalterDepartment of Life Sciences and Chemistry, Jacobs University Bremen, 28719, Bremen, Germany.ORCID http://orcid.org/0000-0002-1604-3318
Matthieu RéfrégiersDISCO beamline, Synchrotron Soleil, Saint-Aubin, France.ORCID http://orcid.org/0000-0002-3281-2308
Paolo RuggeroneDepartment of Physics, University of Cagliari, 09042, Monserrato, CA, Italy.ORCID http://orcid.org/0000-0003-0825-0824
Jean-Marie Pagès *UMR_MD1, U-1261, Aix-Marseille University, INSERM, IRBA, MCT, Marseille, France. Jean-Marie.PAGES@univ-amu.fr.ORCID http://orcid.org/0000-0001-7092-7977

Funding

Optimization of efflux avoidance and inhibition for antibiotic developmentR01AI136799 · NIAID · UNIVERSITY OF OKLAHOMA · PI GNANAKARAN, SANDRASEGARAM, RUGGERONE, PAOLO · 2018 to 2022
$5.7M
NIAID NIH HHS R01 AI136799
6 · The paper itself

Abstract

With the spreading of antibiotic resistance, the translocation of antibiotics through bacterial envelopes is crucial for their antibacterial activity. In Gram-negative bacteria, the interplay between membrane permeability and drug efflux pumps must be investigated as a whole. Here, we quantified the intracellular accumulation of a series of fluoroquinolones in population and in individual cells of Escherichia coli according to the expression of the AcrB efflux transporter. Computational results supported the accumulation levels measured experimentally and highlighted how fluoroquinolones side chains interact with specific residues of the distal pocket of the AcrB tight monomer during recognition and binding steps.

Indexed as

Anti-Bacterial AgentsATP-Binding Cassette, Sub-Family C ProteinsBinding SitesBiological TransportDrug Resistance, BacterialEscherichia coliEscherichia coli ProteinsFluoroquinolonesMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructureProtein BindingSpectrometry, FluorescenceStructure-Activity RelationshipAcrB protein, E coliAnti-Bacterial AgentsATP-Binding Cassette, Sub-Family C ProteinsEscherichia coli ProteinsFluoroquinolones

Identifiers

PMID32346058
PMCPMC7189378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.