Evidence map›Paper›PMID 32345972›Full record

ArticleNature communications2020

LipidCreator workbench to probe the lipidomic landscape.

Bing Peng, Dominik Kopczynski, Brian S Pratt, Christer S Ejsing, Bo Burla, Martin Hermansson, Peter Imre Benke, Sock Hwee Tan, Mark Y Chan, Federico Torta and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 95 citations in OpenAlex.

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  11. Discrimination of CommonJournal of the American Society for Mass Spectrometry · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 7 countries.

Bing Peng *Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., 44139, Dortmund, Germany.ORCID http://orcid.org/0000-0001-5006-7041
Dominik Kopczynski *Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., 44139, Dortmund, Germany.
Brian S PrattUniversity of Washington, Department of Genome Sciences, WA, 98195, Seattle, USA.ORCID http://orcid.org/0000-0001-5880-6734
Christer S EjsingDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, DK-, 5230, Odense, Denmark.ORCID http://orcid.org/0000-0003-4963-0276
Bo BurlaSingapore Lipidomics Incubator (SLING), Life Sciences Institute, National University of Singapore, 117456, Singapore, Singapore.ORCID http://orcid.org/0000-0002-5918-3249
Martin HermanssonDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, DK-, 5230, Odense, Denmark.
Peter Imre BenkeSingapore Lipidomics Incubator (SLING), Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 117596, Singapore, Singapore.
Sock Hwee TanDepartment of Medicine, Yong Loo Lin School of Medicine, National University Hospital, 119228, Singapore, Singapore.
Mark Y ChanDepartment of Medicine, Yong Loo Lin School of Medicine, National University Hospital, 119228, Singapore, Singapore.ORCID http://orcid.org/0000-0003-0389-7450
Federico TortaSingapore Lipidomics Incubator (SLING), Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 117596, Singapore, Singapore.
Dominik SchwudkeResearch Center Borstel, Leibniz Lung Center, Borstel, Germany.
Sven W MeckelmannApplied Analytical Chemistry, University of Duisburg-Essen, 45141, Essen, Germany.
Cristina ComanLeibniz-Institut für Analytische Wissenschaften - ISAS - e.V., 44139, Dortmund, Germany.
Oliver J SchmitzApplied Analytical Chemistry, University of Duisburg-Essen, 45141, Essen, Germany.
Brendan MacLeanUniversity of Washington, Department of Genome Sciences, WA, 98195, Seattle, USA.
Mailin-Christin MankeDepartment of Cardiology and Cardiovascular Medicine, University of Tübingen, 72076, Tübingen, Germany.
Oliver BorstDepartment of Cardiology and Cardiovascular Medicine, University of Tübingen, 72076, Tübingen, Germany.
Markus R WenkSingapore Lipidomics Incubator (SLING), Life Sciences Institute, National University of Singapore, 117456, Singapore, Singapore.
Nils HoffmannLeibniz-Institut für Analytische Wissenschaften - ISAS - e.V., 44139, Dortmund, Germany.ORCID http://orcid.org/0000-0002-6540-6875
Robert AhrendsLeibniz-Institut für Analytische Wissenschaften - ISAS - e.V., 44139, Dortmund, Germany. robert.ahrends@univie.ac.at.ORCID http://orcid.org/0000-0003-0232-3375
National University of Singapore · SGLeibniz Institute for Analytical Sciences - ISAS · DEUniversity of Duisburg-Essen · DEUniversity of Southern Denmark · DKUniversity of Tübingen · DEUniversity of Vienna · ATUniversity of Washington · USGerman Center for Infection Research · DEKarolinska University Hospital · SE

Funding

Skyline Targeted Proteomics EnvironmentR01GM103551 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2020
$3.4M
NIGMS NIH HHS R01 GM103551
6 · The paper itself

Abstract

Mass spectrometry (MS)-based targeted lipidomics enables the robust quantification of selected lipids under various biological conditions but comprehensive software tools to support such analyses are lacking. Here we present LipidCreator, a software that fully supports targeted lipidomics assay development. LipidCreator offers a comprehensive framework to compute MS/MS fragment masses for over 60 lipid classes. LipidCreator provides all functionalities needed to define fragments, manage stable isotope labeling, optimize collision energy and generate in silico spectral libraries. We validate LipidCreator assays computationally and analytically and prove that it is capable to generate large targeted experiments to analyze blood and to dissect lipid-signaling pathways such as in human platelets.

Indexed as

SoftwareAdultBlood PlateletsCalibrationFemaleHumansLipidomicsLipidsMalePlatelet ActivationProbabilityReproducibility of ResultsSignal TransductionYoung AdultLipids

Identifiers

PMID32345972
PMCPMC7188904
OpenAlexW3020683739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.