Evidence map›Paper›PMID 32345963›Full record

ArticleNature communications2020

Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas.

Aswini Krishnan, Jean Berthelet, Emilie Renaud, Sebastian Rosigkeit, Ute Distler, Eric Stawiski, Jing Wang, Zora Modrusan, Marc Fiedler, Mariann Bienz and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  8. Phase separation underlies signaling activation of oncogenic NTRK fusions.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Review
  10. Review
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  12. [Clinical significance of multigene assay in papillary thyroid carcinoma].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 4 countries.

Aswini Krishnan *Cell Biology Unit, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany.
Jean Berthelet *Cell Biology Unit, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany.
Emilie RenaudCell Biology Unit, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany.
Sebastian RosigkeitCell Biology Unit, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany.
Ute DistlerInstitute of Immunology, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany.ORCID http://orcid.org/0000-0002-8031-6384
Eric StawiskiMedGenome, Inc., Foster City, CA, USA.
Jing WangMedGenome, Inc., Foster City, CA, USA.
Zora ModrusanMolecular Biology Department, Genentech, Inc., South San Francisco, CA, USA.
Marc FiedlerMRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID http://orcid.org/0000-0003-4269-7873
Mariann BienzMRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID http://orcid.org/0000-0002-7170-8706
Stefan TenzerInstitute of Immunology, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany.ORCID http://orcid.org/0000-0003-3034-0017
Arno SchadInstitute of Pathology, University Medical Center Mainz, Mainz, Germany.
Wilfried RothInstitute of Pathology, University Medical Center Mainz, Mainz, Germany.
Bernd ThiedeDepartment of Biosciences, University of Oslo, 0371, Oslo, Norway.ORCID http://orcid.org/0000-0002-2804-9522
Somasekar SeshagiriMolecular Biology Department, Genentech, Inc., South San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4272-6443
Thomas J MusholtEndocrine Surgery Section, Department of General Visceral and Transplantation Surgery, University Medicine, Mainz, Germany.
Krishnaraj RajalingamCell Biology Unit, University Medical Center of the Johannes Gutenberg University Mainz, 55131, Mainz, Germany. krishna@uni-mainz.de.ORCID http://orcid.org/0000-0002-4175-9633
Johannes Gutenberg University Mainz · DEMRC Laboratory of Molecular Biology · GBSciGenom Research Foundation · INUniversity of Oslo · NO

Funding

Medical Research Council MC_U105192713
6 · The paper itself

Abstract

Papillary thyroid cancer (PTC) is the most common type of endocrine malignancy. By RNA-seq analysis, we identify a RET rearrangement in the tumour material of a patient who does not harbour any known RAS or BRAF mutations. This new gene fusion involves exons 1-4 from the 5' end of the Trk fused Gene (TFG) fused to the 3' end of RET tyrosine kinase leading to a TFG-RET fusion which transforms immortalized human thyroid cells in a kinase-dependent manner. TFG-RET oligomerises in a PB1 domain-dependent manner and oligomerisation of TFG-RET is required for oncogenic transformation. Quantitative proteomic analysis reveals the upregulation of E3 Ubiquitin ligase HUWE1 and DUBs like USP9X and UBP7 in both tumor and metastatic lesions, which is further confirmed in additional patients. Expression of TFG-RET leads to the upregulation of HUWE1 and inhibition of HUWE1 significantly reduces RET-mediated oncogenesis.

Indexed as

ProteogenomicsAmino Acid SequenceBase SequenceCell Line, TumorCell ProliferationCell SurvivalCell Transformation, NeoplasticHumansInhibitory Concentration 50Lymphatic MetastasisMutationOncogene Proteins, FusionProtein MultimerizationProteinsProto-Oncogene Proteins c-retThyroid Cancer, PapillaryHUWE1 protein, humanOncogene Proteins, FusionProteinsProto-Oncogene Proteins c-retTFG protein, humanTumor Suppressor ProteinsUbiquitinUbiquitin-Protein LigasesVesicular Transport Proteins

Identifiers

PMID32345963
PMCPMC7188865
OpenAlexW3019696691

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.