Evidence map›Paper›PMID 32345719›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

A widespread toxin-antitoxin system exploiting growth control via alarmone signaling.

Steffi Jimmy, Chayan Kumar Saha, Tatsuaki Kurata, Constantine Stavropoulos, Sofia Raquel Alves Oliveira, Alan Koh, Albinas Cepauskas, Hiraku Takada, Dominik Rejman, Tanel Tenson and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Microorganisms · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Type II Toxin-Antitoxin Systems inInfection and drug resistance · 2025
    Review
  14. Prokaryotic homeostasis - a solution to thrive and survive.Frontiers in molecular biosciences · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. mSystems · 2024
    Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 5 countries.

Steffi JimmyDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden.ORCID 0000-0002-6309-4791
Chayan Kumar SahaDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden.ORCID 0000-0002-5357-517X
Tatsuaki KurataDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden.
Constantine StavropoulosDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden.
Sofia Raquel Alves OliveiraInstitute of Technology, University of Tartu, 50411 Tartu, Estonia.ORCID 0000-0001-6090-6742
Alan KohCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, NE2 4AX Newcastle upon Tyne, United Kingdom.
Albinas CepauskasCellular and Molecular Microbiology, Faculté des Sciences, Université Libre de Bruxelles, 6041 Gosselies, Belgium.ORCID 0000-0002-4601-0015
Hiraku TakadaDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden.ORCID 0000-0003-2034-5666
Dominik RejmanInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, CZ-166 10 Prague 6, Czech Republic.ORCID 0000-0001-5977-5001
Tanel TensonInstitute of Technology, University of Tartu, 50411 Tartu, Estonia.ORCID 0000-0002-0260-3601
Henrik StrahlCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, NE2 4AX Newcastle upon Tyne, United Kingdom.ORCID 0000-0003-4416-2178
Abel Garcia-PinoCellular and Molecular Microbiology, Faculté des Sciences, Université Libre de Bruxelles, 6041 Gosselies, Belgium.
Vasili HauryliukDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden; vasili.hauryliuk@umu.se gemma.atkinson@umu.se.ORCID 0000-0003-2389-5057
Gemma C AtkinsonDepartment of Molecular Biology, Umeå University, 901 87 Umeå, Sweden; vasili.hauryliuk@umu.se gemma.atkinson@umu.se.ORCID 0000-0002-4861-4584
Umeå University · SEUniversity of Tartu · EENewcastle University · GBUniversité Libre de Bruxelles · BECzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZ

Funding

Biotechnology and Biological Sciences Research Council BB/S00257X/1
6 · The paper itself

Abstract

Under stressful conditions, bacterial RelA-SpoT Homolog (RSH) enzymes synthesize the alarmone (p)ppGpp, a nucleotide second messenger. (p)ppGpp rewires bacterial transcription and metabolism to cope with stress, and, at high concentrations, inhibits the process of protein synthesis and bacterial growth to save and redirect resources until conditions improve. Single-domain small alarmone synthetases (SASs) are RSH family members that contain the (p)ppGpp synthesis (SYNTH) domain, but lack the hydrolysis (HD) domain and regulatory C-terminal domains of the long RSHs such as Rel, RelA, and SpoT. We asked whether analysis of the genomic context of SASs can indicate possible functional roles. Indeed, multiple SAS subfamilies are encoded in widespread conserved bicistronic operon architectures that are reminiscent of those typically seen in toxin-antitoxin (TA) operons. We have validated five of these SASs as being toxic (toxSASs), with neutralization by the protein products of six neighboring antitoxin genes. The toxicity of

Indexed as

Adenine NucleotidesBacteriaBacterial ProteinsDatabases, GeneticGene Expression Regulation, BacterialGuanosine PentaphosphateGuanosine TetraphosphateGuanosine TriphosphateLigasesPyrophosphatasesSignal TransductionStress, PhysiologicalToxin-Antitoxin SystemsAdenine Nucleotidesadenosine 3'-diphosphate 5'-diphosphateBacterial Proteinsguanosine-3',5'-bis(diphosphate) 3'-pyrophosphataseguanosine 3',5'-polyphosphate synthetasesGuanosine PentaphosphateGuanosine TetraphosphateGuanosine TriphosphateLigasesPyrophosphatasesalarmoneantitoxinppAppppGpptoxin

Identifiers

PMID32345719
PMCPMC7229694
OpenAlexW3019098313

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.