Evidence map›Paper›PMID 32343961›Full record

ArticleCell systems2020

Encoding Membrane-Potential-Based Memory within a Microbial Community.

Chih-Yu Yang, Maja Bialecka-Fornal, Colleen Weatherwax, Joseph W Larkin, Arthur Prindle, Jintao Liu, Jordi Garcia-Ojalvo, Gürol M Süel

Open access · greenAbstract read
In one paragraph

Article in Cell systems, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
10.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 146 citations in OpenAlex.

  1. Article
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  5. Illuminating the dark majority: photobiology of nonphotosynthetic bacteria.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2025
    Review
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  14. Open problems in synthetic multicellularity.NPJ systems biology and applications · 2024
    Article
  15. Article
  16. Review
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  18. Article
  19. Review
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Chih-Yu YangDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Maja Bialecka-FornalDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Colleen WeatherwaxDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Joseph W LarkinDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Arthur PrindleDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Jintao LiuDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA; Center for Infectious Diseases Research and Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, People's Republic of China.
Jordi Garcia-OjalvoDepartment of Experimental and Health Sciences, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, Barcelona 08003, Spain.
Gürol M SüelDivision of Biological Sciences, University of California, San Diego, Pacific Hall Room 2225B, Mail Code 0347, 9500 Gilman Drive, La Jolla, CA 92093, USA; San Diego Center for Systems Biology, University of California, San Diego, La Jolla, CA 92093, USA; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA 92093-0380, USA. Electronic address: gsuel@ucsd.edu.
University of California San Diego · USKing Center · USNorthwestern University · USUniversitat Pompeu Fabra · ES

Funding

Charge matters: Pursuing the most common, and least understood molecular interactions in cellsR35GM139645 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUEL, GUROL MEHMET · 2021 to 2025
$2.8M
Electrical signaling in bacterial biofilmsR01GM121888 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUEL, GUROL MEHMET · 2017 to 2020
$2.0M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM121888NIGMS NIH HHS R35 GM139645
6 · The paper itself

Abstract

Cellular membrane potential plays a key role in the formation and retrieval of memories in the metazoan brain, but it remains unclear whether such memory can also be encoded in simpler organisms like bacteria. Here, we show that single-cell-level memory patterns can be imprinted in bacterial biofilms by light-induced changes in the membrane potential. We demonstrate that transient optical perturbations generate a persistent and robust potassium-channel-mediated change in the membrane potential of bacteria within the biofilm. The light-exposed cells respond in an anti-phase manner, relative to unexposed cells, to both natural and induced oscillations in extracellular ion concentrations. This anti-phase response, which persists for hours following the transient optical stimulus, enables a direct single-cell resolution visualization of spatial memory patterns within the biofilm. The ability to encode robust and persistent membrane-potential-based memory patterns could enable computations within prokaryotic communities and suggests a parallel between neurons and bacteria.

Indexed as

BacteriaBiofilmsMembrane PotentialsMemoryMicrobiotaModels, TheoreticalOptical PhenomenaPotassium ChannelsVoltage-Sensitive Dye ImagingPotassium Channelsanti-phasebiofilmHodgkin-Huxleyion channelsmembrane potentialmemorymicrobial communitiesopticalpersistentrobust

Identifiers

PMID32343961
PMCPMC7286314
OpenAlexW3020457274

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.