Evidence map›Paper›PMID 32343843›Full record

ArticleThe New phytologist2020

The Arabidopsis mTERF-repeat MDA1 protein plays a dual function in transcription and stabilization of specific chloroplast transcripts within the psbE and ndhH operons.

Louis-Valentin Méteignier, Rabea Ghandour, Karin Meierhoff, Aude Zimmerman, Johana Chicher, Nicolas Baumberger, Abdelmalek Alioua, Jörg Meurer, Reimo Zoschke, Kamel Hammani

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 51 citations in OpenAlex.

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  10. Review
  11. Plant organellar RNA maturation.The Plant cell · 2023
    Review
  12. Article
  13. CAF Proteins Help SOT1 Regulate the Stability of ChloroplastInternational journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Louis-Valentin MéteignierInstitut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg, 12 rue du Général Zimmer, 67084, Strasbourg, France.ORCID 0000-0001-9639-5737
Rabea GhandourMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Karin MeierhoffInstitute of Developmental and Molecular Biology of Plants, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID 0000-0001-5273-7651
Aude ZimmermanInstitut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg, 12 rue du Général Zimmer, 67084, Strasbourg, France.
Johana ChicherPlateforme protéomique Strasbourg Esplanade FRC1589 du CNRS, Université de Strasbourg, 15 rue René Descartes, 67084, Strasbourg, France.ORCID 0000-0002-4403-7484
Nicolas BaumbergerInstitut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg, 12 rue du Général Zimmer, 67084, Strasbourg, France.ORCID 0000-0003-3459-4532
Abdelmalek AliouaInstitut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg, 12 rue du Général Zimmer, 67084, Strasbourg, France.
Jörg MeurerPlant Sciences, Faculty of Biology, Ludwig-Maximilians-University Munich, Großhaderner Street 2-4, 82152, Planegg-Martinsried, Germany.ORCID 0000-0003-2973-9514
Reimo ZoschkeMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.ORCID 0000-0002-6898-6836
Kamel HammaniInstitut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg, 12 rue du Général Zimmer, 67084, Strasbourg, France.ORCID 0000-0001-5759-5955
Centre National de la Recherche Scientifique · FRMax Planck Institute of Molecular Plant Physiology · DEHeinrich Heine University Düsseldorf · DELudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mTERF gene family encodes for nucleic acid binding proteins that are predicted to regulate organellar gene expression in eukaryotes. Despite the implication of this gene family in plant development and response to abiotic stresses, a precise molecular function was assigned to only a handful number of its c. 30 members in plants. Using a reverse genetics approach in Arabidopsis thaliana and combining molecular and biochemical techniques, we revealed new functions for the chloroplast mTERF protein, MDA1. We demonstrated that MDA1 associates in vivo with components of the plastid-encoded RNA polymerase and transcriptional active chromosome complexes. MDA1 protein binds in vivo and in vitro with specificity to 27-bp DNA sequences near the 5'-end of psbE and ndhA chloroplast genes to stimulate their transcription, and additionally promotes the stabilization of the 5'-ends of processed psbE and ndhA messenger (m)RNAs. Finally, we provided evidence that MDA1 function in gene transcription likely coordinates RNA folding and the action of chloroplast RNA-binding proteins on mRNA stabilization. Our results provide examples for the unexpected implication of DNA binding proteins and gene transcription in the regulation of mRNA stability in chloroplasts, blurring the boundaries between DNA and RNA metabolism in this organelle.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplast ProteinsChloroplastsGene Expression Regulation, PlantMutationOperonTranscription FactorsArabidopsis ProteinsAt4g14605 protein, ArabidopsisChloroplast ProteinsTranscription FactorsDNAgene expressionhelical repeat proteinmTERFplastidRNA

Identifiers

PMID32343843
PMCPMC7496394
OpenAlexW3017584669

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.