Evidence map›Paper›PMID 32342578›Full record

ArticleEnvironmental microbiology2020

The importance of naturally attenuated SARS-CoV-2in the fight against COVID-19.

Jean Armengaud, Agnès Delaunay-Moisan, Jean-Yves Thuret, Eelco van Anken, Diego Acosta-Alvear, Tomás Aragón, Carolina Arias, Marc Blondel, Ineke Braakman, Jean-François Collet and 17 more

Abstract readComment
In one paragraph

Article in Environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  9. Profiling SARS-CoV-2 Infection by High-Throughput Shotgun Proteomics.Methods in molecular biology (Clifton, N.J.) · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Jean ArmengaudUniversité Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, Bagnols-sur-Cèze, 30200, France.ORCID 0000-0003-1589-445X
Agnès Delaunay-MoisanUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, 91198, France.
Jean-Yves ThuretUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, 91198, France.ORCID 0000-0001-5385-7620
Eelco van AnkenDivision of Genetics and Cell Biology, San Raffaele Scientific Institute, Università Vita-Salute San Raffaele, Via Olgettina 58, Milan, 20132, Italy.ORCID 0000-0001-9529-2701
Diego Acosta-AlvearDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA.ORCID 0000-0002-1139-8486
Tomás AragónCenter for Applied Medical Research, Department of Gene Therapy and Regulation of Gene Expression, University of Navarra, 55 Pio XII Street, Pamplona, 31008, Spain.ORCID 0000-0002-1700-2729
Carolina AriasDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA.ORCID 0000-0002-4445-0826
Marc BlondelInstitut National de la Santé et de la Recherche Médicale UMR1078, 22 Avenue Camille Desmoulins, Brest, F-29200, France.ORCID 0000-0003-4897-2995
Ineke BraakmanCellular Protein Chemistry, Bijvoet Centre for Biomolecular Science, Science for Life, Utrecht University, The Netherlands.ORCID 0000-0003-1592-4364
Jean-François Colletde Duve Institute, Université Catholique de Louvain, Brussels, Belgium.ORCID 0000-0001-8069-7036
René CourcolExpertise France, 73 Avenue de Vaugirard, Paris, 75006, France.ORCID 0000-0003-2324-5687
Antoine DanchinStellate Therapeutics/Kodikos, Institut Cochin, Paris, 75014, France.ORCID 0000-0002-6350-5001
Jean-François DeleuzeCentre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, Evry, 91057, France.ORCID 0000-0002-5358-4463
Jean-Philippe LavigneU1047, Institut National de la Santé et de la Recherche Médicale, Université Montpellier, Montpellier, France.ORCID 0000-0002-9484-0304
Sophie Lucasde Duve Institute, Université Catholique de Louvain, Brussels, Belgium.ORCID 0000-0003-1287-7996
Thomas Michielsde Duve Institute, Université Catholique de Louvain, Brussels, Belgium.ORCID 0000-0001-9615-8053
Edward R B MooreDepartment of Infectious Diseases, Institute for Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, SE-41346, Sweden.ORCID 0000-0001-7693-924X
Jonathon Nixon-AbellDepartment of Clinical Neurosciences, Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.ORCID 0000-0003-4169-0012
Ramon Rossello-MoraMarine Microbiology Group, Department of Animal and Bacterial Diversity, IMEDEA (CSIC-UIB), Esporles, Balearic Islands, 07190, Spain.ORCID 0000-0001-8253-3107
Zheng-Li ShiCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, People's Republic of China.ORCID 0000-0001-8089-163X
Antonio G SiccardiDivision of Genetics and Cell Biology, San Raffaele Scientific Institute, Università Vita-Salute San Raffaele, Via Olgettina 58, Milan, 20132, Italy.ORCID 0000-0002-1654-5545
Roberto SitiaDivision of Genetics and Cell Biology, San Raffaele Scientific Institute, Università Vita-Salute San Raffaele, Via Olgettina 58, Milan, 20132, Italy.ORCID 0000-0001-7086-4152
Daniel TillettNucleics Pty Ltd, 29 John Street, Woollahra, New South Wales, 2025, Australia.ORCID 0000-0003-1061-0489
Kenneth N TimmisInstitute of Microbiology, Technical University Braunschweig, Braunschweig, Germany.ORCID 0000-0002-0066-4670
Michel B ToledanoUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, 91198, France.ORCID 0000-0002-3079-1179
Peter van der SluijsCellular Protein Chemistry, Bijvoet Centre for Biomolecular Science, Science for Life, Utrecht University, The Netherlands.ORCID 0000-0002-4485-3342
Elisa VicenziViral Pathogenesis and Biosafety Unit, San Raffaele Scientific Institute, Via Olgettina 58, Milan, 20132, Italy.ORCID 0000-0003-0051-3968

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current SARS-CoV-2 pandemic is wreaking havoc throughout the world and has rapidly become a global health emergency. A central question concerning COVID-19 is why some individuals become sick and others not. Many have pointed already at variation in risk factors between individuals. However, the variable outcome of SARS-CoV-2 infections may, at least in part, be due also to differences between the viral subspecies with which individuals are infected. A more pertinent question is how we are to overcome the current pandemic. A vaccine against SARS-CoV-2 would offer significant relief, although vaccine developers have warned that design, testing and production of vaccines may take a year if not longer. Vaccines are based on a handful of different designs (i), but the earliest vaccines were based on the live, attenuated virus. As has been the case for other viruses during earlier pandemics, SARS-CoV-2 will mutate and may naturally attenuate over time (ii). What makes the current pandemic unique is that, thanks to state-of-the-art nucleic acid sequencing technologies, we can follow in detail how SARS-CoV-2 evolves while it spreads. We argue that knowledge of naturally emerging attenuated SARS-CoV-2 variants across the globe should be of key interest in our fight against the pandemic.

Indexed as

BetacoronavirusSevere acute respiratory syndrome-related coronavirusCoronavirus InfectionsCOVID-19Disease OutbreaksHumansPandemicsPneumonia, ViralSARS-CoV-2

Identifiers

PMID32342578
PMCPMC7267670

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.