Evidence map›Paper›PMID 32342229›Full record

ArticleAMB Express2020

Identification of key genes and pathways in syphilis combined with diabetes: a bioinformatics study.

Wei Li, Chunyi Luo, Xiaoping Xie, Yongjian Xiao, Feijun Zhao, Jialun Cai, Xiangping Zhou, Tiebing Zeng, Bo Fu, Yimou Wu and 2 more

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Wei LiDepartment of Clinical Laboratory, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, 421000, Hunan, China.
Chunyi LuoDepartment of Clinical Laboratory, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, 421000, Hunan, China.
Xiaoping XieDepartment of Clinical Laboratory, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, 421000, Hunan, China.
Yongjian XiaoDepartment of Clinical Laboratory, The Second Affiliated Hospital of University of South China, Hengyang, Hunan, China.
Feijun ZhaoInstitute of Pathogenic Biology and Key Laboratory of Special Pathogen Prevention and Control of Hunan Province, University of South China, Hengyang, Hunan, China.
Jialun CaiDepartment of Clinical Laboratory, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, 421000, Hunan, China.
Xiangping ZhouDepartment of Clinical Laboratory, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, 421000, Hunan, China.
Tiebing ZengInstitute of Pathogenic Biology and Key Laboratory of Special Pathogen Prevention and Control of Hunan Province, University of South China, Hengyang, Hunan, China.
Bo FuInstitute of Pathogenic Biology and Key Laboratory of Special Pathogen Prevention and Control of Hunan Province, University of South China, Hengyang, Hunan, China.
Yimou WuInstitute of Pathogenic Biology and Key Laboratory of Special Pathogen Prevention and Control of Hunan Province, University of South China, Hengyang, Hunan, China.
Xinhua XiaoDepartment of Endocrinolog, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, Hunan, 421000, China. xinhua0102@163.com.
Shuangquan LiuDepartment of Clinical Laboratory, The First Affiliated Hospital of University of South China, No. 69, Chuanshan Road, Shigu District, Hengyang City, 421000, Hunan, China. dantelliu@163.com.
University of South China · CNFirst Affiliated Hospital of University of South China · CN

Funding

National Natural Science Foundation of China 81201331
6 · The paper itself

Abstract

We noticed that syphilis patients seem to be more susceptible to diabetes and the lesions often involve the kidneys, but the pathogenesis is not yet completely understood. In this study, microarray analysis was performed to investigate the dysregulated expressed genes (DEGs) in rabbit model of syphilis combined with diabetes. A total of 1045 genes were identified to be significantly differentially expressed, among which 571 were up-regulated and 474 were down-regulated (≥ 2.0fold, p < 0.05). Using the database visualization and integration discovery for the Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis. The downregulated DEGs were significantly enriched for biosynthesis of antibiotics, carbon metabolism and protein digestion, while the upregulated DEGs were mainly enriched for cancer and PI3K-Akt signaling pathway. Molecular Complex Detection (MCODE) plugins were used to visualize protein-protein interaction (PPI) network of DEGs and Screening for hub genes and gene modules. ALB, FN1, CASP3, MMP9, IL8, CTGF, STAT3, IGF1, VCAM-1 and HGF were filtrated as the hub genes according to the degree of connectivity from the PPI network. To the best of our knowledge, this study is the first to comprehensively identify the expression patterns of dysregulated genes in syphilis combined with diabetes, providing a basis for revealing the underlying pathogenesis of syphilis combined with diabetes and exploring the goals of therapeutic intervention.

Indexed as

BioinformaticsDiabetes mellitusSyphilisTreponema pallidum

Identifiers

PMID32342229
PMCPMC7186291
OpenAlexW3020766798

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.