Evidence map›Paper›PMID 32341568›Full record

ArticleNature microbiology2020

Niche specialization and spread of Staphylococcus capitis involved in neonatal sepsis.

Thierry Wirth, Marine Bergot, Jean-Philippe Rasigade, Bruno Pichon, Maxime Barbier, Patricia Martins-Simoes, Laurent Jacob, Rachel Pike, Pierre Tissieres, Jean-Charles Picaud and 6 more

Open access · bronzeAbstract read
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In one paragraph

Article in Nature microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
1.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 58 citations in OpenAlex.

  1. InJournal of bacteriology · 2026
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  2. Whole-genome sequencing ofMicrobial genomics · 2026
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  6. InbioRxiv : the preprint server for biology · 2026
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  7. Gut microbes · 2025
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  10. Epidemiology ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
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  11. Multiple introductions of NRCS-AMicrobial genomics · 2025
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  12. Clinical microbiology reviews · 2024
    Review
  13. Article
  14. Article
  15. Antibiotics (Basel, Switzerland) · 2024
    Article
  16. Article
  17. Review
  18. Characterisation of neonatalMicrobial genomics · 2023
    Article
  19. Markers of epidemiological success of methicillin-resistant Staphylococcus aureus isolates in European populations.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2023
    Article
  20. Antibiotics (Basel, Switzerland) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 20 institutions in 23 countries.

Thierry WirthInstitut Systématique Evolution Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, Université des Antilles, EPHE, Paris, France. wirth@mnhn.fr.ORCID http://orcid.org/0000-0002-7371-0172
Marine BergotInstitut des Agents Infectieux, Département de Bactériologie, Centre National de Référence des Staphylocoques, Hospices Civils de Lyon, Lyon, France.
Jean-Philippe RasigadeInstitut Systématique Evolution Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, Université des Antilles, EPHE, Paris, France.
Bruno PichonStaphylococcus Reference Section, National Infection Service, Public Health England, London, UK.
Maxime BarbierInstitut Systématique Evolution Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, Université des Antilles, EPHE, Paris, France.
Patricia Martins-SimoesInstitut des Agents Infectieux, Département de Bactériologie, Centre National de Référence des Staphylocoques, Hospices Civils de Lyon, Lyon, France.
Laurent JacobLaboratoire Biométrie et Biologie Evolutive, CNRS UMR5558, Université Lyon 1, Lyon, France.
Rachel PikeStaphylococcus Reference Section, National Infection Service, Public Health England, London, UK.
Pierre TissieresInstitut de Biologie de la cellule (I2BC-UMR9198), CNRS, CEA, Univ. Paris Sud, Université Paris Saclay, Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0001-5423-5532
Jean-Charles PicaudService de Réanimation Néonatale, Hôpital Croix Rousse, Hospices Civils de Lyon, Lyon, France.
Angela KearnsStaphylococcus Reference Section, National Infection Service, Public Health England, London, UK.
Philip SupplyUniversité de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Centre d'Infection et d'Immunité de Lille, Lille, France.
Marine Butin *Centre International de recherche en Infectiologie, INSERM U1111 - CNRS UMR5308 - ENS Lyon - Université Lyon 1, Lyon, France. marine.butin@chu-lyon.fr.ORCID http://orcid.org/0000-0001-9453-4641
Frédéric Laurent *Institut des Agents Infectieux, Département de Bactériologie, Centre National de Référence des Staphylocoques, Hospices Civils de Lyon, Lyon, France.
International Consortium for Staphylococcus capitis neonatal sepsis
ESGS Study Group of ESCMID
Université Claude Bernard Lyon 1 · FRCentre National de la Recherche Scientifique · FRPublic Health England · GBHospices Civils de Lyon · FRUniversity Hospital Münster · DECentre Hospitalier Universitaire Sainte-Justine · CAChang Gung Children's Hospital · TWChildren's Healthcare of Atlanta · USErasmus Hospital · BEGeneral University Hospital in Prague · CZHeidelberg University · DEHelsinki University Hospital · FIHôpital Femme Mère Enfant · FRHospital Universitari Germans Trias i Pujol · ESInstituto de Biologia Experimental e Tecnológica · PTOslo University Hospital · NORMIT University · AUSeoul National University Hospital · KRStatens Serum Institut · DKSt George's, University of London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The multidrug-resistant Staphylococcus capitis NRCS-A clone is responsible for sepsis in preterm infants in neonatal intensive care units (NICUs) worldwide. Here, to retrace the spread of this clone and to identify drivers of its specific success, we investigated a representative collection of 250 S. capitis isolates from adults and newborns. Bayesian analyses confirmed the spread of the NRCS-A clone and enabled us to date its emergence in the late 1960s and its expansion during the 1980s, coinciding with the establishment of NICUs and the increasing use of vancomycin in these units, respectively. This dynamic was accompanied by the acquisition of mutations in antimicrobial resistance- and bacteriocin-encoding genes. Furthermore, combined statistical tools and a genome-wide association study convergently point to vancomycin resistance as a major driver of NRCS-A success. We also identified another S. capitis subclade (alpha clade) that emerged independently, showing parallel evolution towards NICU specialization and non-susceptibility to vancomycin, indicating convergent evolution in NICU-associated pathogens. These findings illustrate how the broad use of antibiotics can repeatedly lead initially commensal drug-susceptible bacteria to evolve into multidrug-resistant clones that are able to successfully spread worldwide and become pathogenic for highly vulnerable patients.

Indexed as

AdultAnti-Bacterial AgentsBayes TheoremDrug Resistance, Multiple, BacterialFranceGenes, BacterialGenome, BacterialGenome-Wide Association StudyGenotypeHumansInfantInfant, NewbornIntensive Care Units, NeonatalMicrobial Sensitivity TestsMutationNeonatal SepsisAnti-Bacterial AgentsVancomycin

Identifiers

PMID32341568
OpenAlexW3020029772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.