Evidence map›Paper›PMID 32341509›Full record

ArticleNature immunology2020

Novel specialized cell state and spatial compartments within the germinal center.

Domenick E Kennedy, Michael K Okoreeh, Mark Maienschein-Cline, Junting Ai, Margaret Veselits, Kaitlin C McLean, Yogesh Dhungana, Hong Wang, Junmin Peng, Hongbo Chi and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 97 citations in OpenAlex.

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  14. Single-Cell Transcriptomic Analysis of Normal and Malignant B Cells.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
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  16. Review
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  19. The influence of metabolic disorders on adaptive immunity.Cellular & molecular immunology · 2024
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Domenick E KennedyDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-5329-3711
Michael K OkoreehDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Mark Maienschein-ClineCore for Research Informatics, University of Illinois at Chicago, Chicago, IL, USA.
Junting AiDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Margaret VeselitsDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Kaitlin C McLeanDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Yogesh DhunganaDepartment of Immunology, St Jude Children's Research Hospital, Memphis, TN, USA.
Hong WangDepartments of Structural Biology and Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-6215-6348
Junmin PengDepartments of Structural Biology and Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-0472-7648
Hongbo ChiDepartment of Immunology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-9997-2496
Malay MandalDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-0451-3896
Marcus R ClarkDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA. mclark@uchicago.edu.ORCID http://orcid.org/0000-0003-4747-0387
University of Chicago · USSt. Jude Children's Research Hospital · USUniversity of Illinois Chicago · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI MARK W. LINGEN · 1985 to 2026
$122.1M
RESEARCH TRAINING IN RESPIRATORY BIOLOGYT32HL007605 · NHLBI · UNIVERSITY OF CHICAGO · PI Yun Fang, Gokhan M. Mutlu · 1985 to 2026
$18.1M
Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
The epigenetic reader BRWD1 in peripheral adaptive immunityR01AI143778 · NIAID · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 2019 to 2023
$2.4M
Regulation of Ig-kappa recombination during B lymphopoiesisR01AI120715 · NIAID · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 2015 to 2019
$2.3M
RNA splicing dysfunction in Alzheimer's diseaseR01AG047928 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2015 to 2019
$1.8M
BRWD1 in adaptive humoral immunityR21AI128785 · NIAID · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 2017 to 2018
$444k
BRWD1 and the molecular regulation of humoral immunityF32AI143120 · NIAID · UNIVERSITY OF CHICAGO · PI KENNEDY, DOMENICK EDWARD · 2019 to 2020
$95k
NCI NIH HHS P30 CA014599NHLBI NIH HHS T32 HL007605NIAID NIH HHS F32 AI143120NIAID NIH HHS R01 AI120715NIAID NIH HHS R01 AI143778NIAID NIH HHS R21 AI128785NIA NIH HHS R01 AG047928NICHD NIH HHS T32 HD007009
6 · The paper itself

Abstract

Within germinal centers (GCs), complex and highly orchestrated molecular programs must balance proliferation, somatic hypermutation and selection to both provide effective humoral immunity and to protect against genomic instability and neoplastic transformation. In contrast to this complexity, GC B cells are canonically divided into two principal populations, dark zone (DZ) and light zone (LZ) cells. We now demonstrate that, following selection in the LZ, B cells migrated to specialized sites within the canonical DZ that contained tingible body macrophages and were sites of ongoing cell division. Proliferating DZ (DZp) cells then transited into the larger DZ to become differentiating DZ (DZd) cells before re-entering the LZ. Multidimensional analysis revealed distinct molecular programs in each population commensurate with observed compartmentalization of noncompatible functions. These data provide a new three-cell population model that both orders critical GC functions and reveals essential molecular programs of humoral adaptive immunity.

Indexed as

AnimalsBiomarkersCellular MicroenvironmentComputational BiologyFluorescent Antibody TechniqueGene Expression ProfilingGenomicsGerminal CenterMicePhosphorylationProteomeProteomicsTranscriptomeBiomarkersProteome

Identifiers

PMID32341509
PMCPMC7255947
OpenAlexW3020317539

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.