Evidence map›Paper›PMID 32341405›Full record

ArticleScientific reports2020

De novo damaging variants associated with congenital heart diseases contribute to the connectome.

Weizhen Ji, Dina Ferdman, Joshua Copel, Dustin Scheinost, Veronika Shabanova, Martina Brueckner, Mustafa K Khokha, Laura R Ment

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
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  9. International journal of molecular sciences · 2025
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  18. International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Weizhen JiDepartments of Pediatrics, New Haven, CT, USA.
Dina FerdmanDepartments of Pediatrics, New Haven, CT, USA.
Joshua CopelDepartments of Pediatrics, New Haven, CT, USA.
Dustin ScheinostRadiology and Biomedical Imaging, New Haven, CT, USA.
Veronika ShabanovaDepartments of Pediatrics, New Haven, CT, USA.
Martina Brueckner *Departments of Pediatrics, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-0347-5389
Mustafa K Khokha *Departments of Pediatrics, New Haven, CT, USA.
Laura R Ment *Departments of Pediatrics, New Haven, CT, USA. laura.ment@yale.edu.
Yale University · USInstitut de Médecine de la Reproduction · FR

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
A system approach to the analysis of Heterotaxy Candidate GenesR01HD102186 · NICHD · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K · 2020 to 2024
$3.1M
A system approach to the analysis of Heterotaxy Candiate GenesR01HD081379 · NICHD · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K · 2014 to 2018
$2.7M
Intraciliary calcium directs cardiac left-right asymmetryR01HL125885 · NHLBI · YALE UNIVERSITY · PI BRUECKNER, MARTINA, SUN, ZHAOXIA · 2015 to 2018
$2.3M
Genetics and genomics of congenital heart disease and associated neurodevelopmental abnormalitiesUM1HL098162 · NHLBI · YALE UNIVERSITY · PI BRUECKNER, MARTINA, GUPTA, ABHA RANI · 2015 to 2019
$2.2M
NCATS NIH HHS UL1 TR000142NCATS NIH HHS UL1 TR001863NHLBI NIH HHS R01 HL125885NHLBI NIH HHS UM1 HL098162NICHD NIH HHS R01 HD081379NICHD NIH HHS R01 HD102186
6 · The paper itself

Abstract

Congenital heart disease (CHD) survivors are at risk for neurodevelopmental disability (NDD), and recent studies identify genes associated with both disorders, suggesting that NDD in CHD survivors may be of genetic origin. Genes contributing to neurogenesis, dendritic development and synaptogenesis organize neural elements into networks known as the connectome. We hypothesized that NDD in CHD may be attributable to genes altering both neural connectivity and cardiac patterning. To assess the contribution of de novo variants (DNVs) in connectome genes, we annotated 229 published NDD genes for connectome status and analyzed data from 3,684 CHD subjects and 1,789 controls for connectome gene mutations. CHD cases had more protein truncating and deleterious missense DNVs among connectome genes compared to controls (OR = 5.08, 95%CI:2.81-9.20, Fisher's exact test P = 6.30E-11). When removing three known syndromic CHD genes, the findings remained significant (OR = 3.69, 95%CI:2.02-6.73, Fisher's exact test P = 1.06E-06). In CHD subjects, the top 12 NDD genes with damaging DNVs that met statistical significance after Bonferroni correction (PTPN11, CHD7, CHD4, KMT2A, NOTCH1, ADNP, SMAD2, KDM5B, NSD2, FOXP1, MED13L, DYRK1A; one-tailed binomial test P ≤ 4.08E-05) contributed to the connectome. These data suggest that NDD in CHD patients may be attributable to genes that alter both cardiac patterning and the connectome.

Indexed as

ConnectomeDNA-Binding ProteinsDNA HelicasesExomeFemaleHeart Defects, CongenitalHistone-Lysine N-MethyltransferaseHomeodomain ProteinsHumansMaleMi-2 Nucleosome Remodeling and Deacetylase ComplexMutationMutation, MissenseMyeloid-Lymphoid Leukemia ProteinNerve Tissue ProteinsProtein Tyrosine Phosphatase, Non-Receptor Type 11ADNP protein, humanCHD4 protein, humanCHD7 protein, humanDNA-Binding ProteinsDNA HelicasesHistone-Lysine N-MethyltransferaseHomeodomain ProteinsKMT2A protein, humanMi-2 Nucleosome Remodeling and Deacetylase ComplexMyeloid-Lymphoid Leukemia ProteinNerve Tissue ProteinsNOTCH1 protein, humanProtein Tyrosine Phosphatase, Non-Receptor Type 11PTPN11 protein, humanReceptor, Notch1

Identifiers

PMID32341405
PMCPMC7184603
OpenAlexW3018801021

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.