Evidence map›Paper›PMID 32340198›Full record

ArticleInternational journal of molecular sciences2020

Signal Deconvolution and Noise Factor Analysis Based on a Combination of Time-Frequency Analysis and Probabilistic Sparse Matrix Factorization.

Shunji Yamada, Atsushi Kurotani, Eisuke Chikayama, Jun Kikuchi

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. AnMetabolites · 2021
    Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shunji YamadaGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Nagoya 464-8601, Chikusa-ku, Japan.ORCID 0000-0002-1271-4970
Atsushi KurotaniRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Yokohama 230-0045, Tsurumi-ku, Japan.
Eisuke ChikayamaRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Yokohama 230-0045, Tsurumi-ku, Japan.
Jun KikuchiGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Nagoya 464-8601, Chikusa-ku, Japan.ORCID 0000-0002-6809-394X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nuclear magnetic resonance (NMR) spectroscopy is commonly used to characterize molecular complexity because it produces informative atomic-resolution data on the chemical structure and molecular mobility of samples non-invasively by means of various acquisition parameters and pulse programs. However, analyzing the accumulated NMR data of mixtures is challenging due to noise and signal overlap. Therefore, data-cleansing steps, such as quality checking, noise reduction, and signal deconvolution, are important processes before spectrum analysis. Here, we have developed an NMR measurement informatics tool for data cleansing that combines short-time Fourier transform (STFT; a time-frequency analytical method) and probabilistic sparse matrix factorization (PSMF) for signal deconvolution and noise factor analysis. Our tool can be applied to the original free induction decay (FID) signals of a one-dimensional NMR spectrum. We show that the signal deconvolution method reduces the noise of FID signals, increasing the signal-to-noise ratio (SNR) about tenfold, and its application to diffusion-edited spectra allows signals of macromolecules and unsuppressed small molecules to be separated by the length of the

Indexed as

AlgorithmsFactor Analysis, StatisticalMagnetic Resonance SpectroscopyModels, TheoreticalSignal-To-Noise Ratioacquisition parameterscorrelation network analysisdiffusion-edited spectrumFIDmatrix factorizationmolecular complexityNMRshort-time Fourier transformsignal-to-noise ratioT2* relaxation time

Identifiers

PMID32340198
PMCPMC7215856

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.