Evidence map›Paper›PMID 32338601›Full record

ArticleeLife2020

Multi-state recognition pathway of the intrinsically disordered protein kinase inhibitor by protein kinase A.

Cristina Olivieri, Yingjie Wang, Geoffrey C Li, Manu V S, Jonggul Kim, Benjamin R Stultz, Matthew Neibergall, Fernando Porcelli, Joseph M Muretta, David Dt Thomas and 4 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. HYPK: A marginally disordered protein sensitive to charge decoration.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Protein Kinase Structure and Dynamics: Role of the αC-β4 Loop.bioRxiv : the preprint server for biology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Cristina Olivieri *Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, United States.ORCID 0000-0001-6957-6743
Yingjie Wang *Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, United States.
Geoffrey C Li *Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, United States.ORCID 0000-0001-5035-5916
Manu V SDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, United States.
Jonggul KimDepartment of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, United States.ORCID 0000-0002-4624-7848
Benjamin R StultzDepartment of Chemistry, Bethel University, Saint Paul, United States.
Matthew NeibergallDepartment of Chemistry, Bethel University, Saint Paul, United States.
Fernando PorcelliDIBAF, University of Tuscia, Largo dell' Università, Viterbo, Italy.ORCID 0000-0003-3209-0074
Joseph M MurettaDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, United States.
David Dt ThomasDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, United States.ORCID 0000-0002-8822-2040
Jiali GaoDepartment of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, United States.
Donald K BlumenthalDepartment of Pharmacology and Toxicology, University of Utah, Salt Lake City, United States.
Susan S TaylorDepartment of Chemistry and Biochemistry and Pharmacology, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-7702-6108
Gianluigi VegliaDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, United States.ORCID 0000-0002-2795-6964
University of Minnesota · USBethel University · USUniversità degli Studi della Tuscia · ITUniversity of California San Diego · USUniversity of Utah · US

Funding

Structural Dynamics of Muscle ContractionR01AR032961 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI THOMAS, DAVID D · 1986 to 2018
$8.0M
BIOMOLECULAR INTERACTIONS AND ENZYMATIC PROCESSESR01GM046736 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI JIALI GAO · 1993 to 2026
$6.5M
Lessons Learned from PKA: Assembly of Dynamic Macromolecular SwitchesR35GM130389 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN S. TAYLOR · 2019 to 2026
$5.7M
Structural Dynamics of Cardiac Muscle Calcium ATPase RegulationR01HL139065 · NHLBI · UNIVERSITY OF MINNESOTA · PI Robyn T Rebbeck, David D Thomas · 2020 to 2026
$5.2M
Mapping Allosteric Cooperativity in Protein KinasesR01GM100310 · NIGMS · UNIVERSITY OF MINNESOTA · PI VEGLIA, GIANLUIGI · 2012 to 2019
$4.3M
BIOMOLECULAR INTERACTIONS AND ENZYMATIC PROCESSESR55GM046736 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI GAO, JIALI · 1992 to 1992
–
NHLBI NIH HHS R01 HL139065NIAMS NIH HHS R01 AR032961NIGMS NIH HHS GM 46736NIGMS NIH HHS R01 GM046736NIGMS NIH HHS R01 GM100310NIGMS NIH HHS R35 GM130389
6 · The paper itself

Abstract

In the nucleus, the spatiotemporal regulation of the catalytic subunit of cAMP-dependent protein kinase A (PKA-C) is orchestrated by an intrinsically disordered protein kinase inhibitor, PKI, which recruits the CRM1/RanGTP nuclear exporting complex. How the PKA-C/PKI complex assembles and recognizes CRM1/RanGTP is not well understood. Using NMR, SAXS, fluorescence, metadynamics, and Markov model analysis, we determined the multi-state recognition pathway for PKI. After a fast binding step in which PKA-C selects PKI's most competent conformations, PKI folds upon binding through a slow conformational rearrangement within the enzyme's binding pocket. The high-affinity and pseudo-substrate regions of PKI become more structured and the transient interactions with the kinase augment the helical content of the nuclear export sequence, which is then poised to recruit the CRM1/RanGTP complex for nuclear translocation. The multistate binding mechanism featured by PKA-C/PKI complex represents a paradigm on how disordered, ancillary proteins (or protein domains) are able to operate multiple functions such as inhibiting the kinase while recruiting other regulatory proteins for nuclear export.

Indexed as

Active Transport, Cell NucleusAnimalsCyclic AMP-Dependent Protein KinasesCytoplasmEscherichia coliExportin 1 ProteinIntracellular Signaling Peptides and ProteinsKaryopherinsMagnetic Resonance SpectroscopyMarkov ChainsMiceProtein Kinase InhibitorsRabbitsReceptors, Cytoplasmic and NuclearCyclic AMP-Dependent Protein KinasesExportin 1 ProteinIntracellular Signaling Peptides and ProteinsKaryopherinsProtein Kinase InhibitorsReceptors, Cytoplasmic and NuclearE. coliisotopic labelingmolecular biophysicsprotein expressionrecombinant dnastructural biology

Identifiers

PMID32338601
PMCPMC7234811
OpenAlexW3018844337

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.