Evidence map›Paper›PMID 32337552›Full record

ArticleHuman molecular genetics2020

A rare genomic duplication in 2p14 underlies autosomal dominant hearing loss DFNA58.

Karina Lezirovitz, Gleiciele A Vieira-Silva, Ana C Batissoco, Débora Levy, Joao P Kitajima, Alix Trouillet, Ellen Ouyang, Navid Zebarjadi, Juliana Sampaio-Silva, Vinicius Pedroso-Campos and 11 more

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. A Structural Variant in the 5' Regulatory Region ofInternational archives of otorhinolaryngology · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. The Genomics of Auditory Function and Disease.Annual review of genomics and human genetics · 2022
    Review
  9. Review
  10. Review
  11. Article
  12. Gene alteration in zebrafish exposed to a mixture of substances of abuse.Environmental pollution (Barking, Essex : 1987) · 2021
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 3 countries.

Karina LezirovitzOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Gleiciele A Vieira-SilvaOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Ana C BatissocoOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Débora LevyLipids, Oxidation, and Cell Biology Group, Head, Laboratory of Immunology (LIM19), Heart Institute (InCor), Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 05403-900, Brazil.
Joao P KitajimaMendelics Genomic Analysis, São Paulo 04013-000, Brazil.
Alix TrouilletDepartment of Otolaryngology - Head and Neck Surgery, Stanford University, Stanford, CA 94305, USA.
Ellen OuyangDepartment of Otolaryngology - Head and Neck Surgery, Stanford University, Stanford, CA 94305, USA.
Navid ZebarjadiDepartment of Otolaryngology - Head and Neck Surgery, Stanford University, Stanford, CA 94305, USA.
Juliana Sampaio-SilvaOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Vinicius Pedroso-CamposOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Larissa R NascimentoOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Cindy Y SonodaOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Vinícius M BorgesCentro de Pesquisas sobre o Genoma Humano e Células-Tronco, Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, São Paulo 05508-900, Brazil.
Laura G VasconcelosDepartamento de Otorrinolaringologia, Faculdade de Medicina FMUSP, Universidade de São Paulo, São Paulo 05403-000, Brazil.
Roberto M O BeckDepartamento de Otorrinolaringologia, Faculdade de Medicina FMUSP, Universidade de São Paulo, São Paulo 05403-000, Brazil.
Signe S GraselDepartamento de Otorrinolaringologia, Faculdade de Medicina FMUSP, Universidade de São Paulo, São Paulo 05403-000, Brazil.
Daniel J JaggerUCL Ear Institute, University College London, London WC1E 6BT, UK.
Nicolas GrilletDepartment of Otolaryngology - Head and Neck Surgery, Stanford University, Stanford, CA 94305, USA.
Ricardo F BentoOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Regina C Mingroni-NettoCentro de Pesquisas sobre o Genoma Humano e Células-Tronco, Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, São Paulo 05508-900, Brazil.
Jeanne OiticicaOtorhinolaryngology/LIM32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo 01246-000, Brazil.
Universidade de São Paulo · BRHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BRStanford University · USInstituto Biológico · BRMendelics · BRUniversity College London · GB

Funding

Function of LOXHD1 in mechanosensory hair cellsR01DC016409 · NIDCD · STANFORD UNIVERSITY · PI GRILLET, NICOLAS · 2018 to 2022
$2.1M
Biotechnology and Biological Sciences Research Council BB/M019322/1Biotechnology and Biological Sciences Research Council BB/R000549/1NIDCD NIH HHS R01 DC016409
6 · The paper itself

Abstract

Here we define a ~200 Kb genomic duplication in 2p14 as the genetic signature that segregates with postlingual progressive sensorineural autosomal dominant hearing loss (HL) in 20 affected individuals from the DFNA58 family, first reported in 2009. The duplication includes two entire genes, PLEK and CNRIP1, and the first exon of PPP3R1 (protein coding), in addition to four uncharacterized long non-coding (lnc) RNA genes and part of a novel protein-coding gene. Quantitative analysis of mRNA expression in blood samples revealed selective overexpression of CNRIP1 and of two lncRNA genes (LOC107985892 and LOC102724389) in all affected members tested, but not in unaffected ones. Qualitative analysis of mRNA expression identified also fusion transcripts involving parts of PPP3R1, CNRIP1 and an intergenic region between PLEK and CNRIP1, in the blood of all carriers of the duplication, but were heterogeneous in nature. By in situ hybridization and immunofluorescence, we showed that Cnrip1, Plek and Ppp3r1 genes are all expressed in the adult mouse cochlea including the spiral ganglion neurons, suggesting changes in expression levels of these genes in the hearing organ could underlie the DFNA58 form of deafness. Our study highlights the value of studying rare genomic events leading to HL, such as copy number variations. Further studies will be required to determine which of these genes, either coding proteins or non-coding RNAs, is or are responsible for DFNA58 HL.

Indexed as

AdolescentAdultAnimalsBlood ProteinsCalcineurinChildChromosome DuplicationChromosomes, Human, Pair 2Disease Models, AnimalDNA Copy Number VariationsFemaleGene Expression RegulationGenetic Predisposition to DiseaseGenome, HumanHearing Loss, SensorineuralHeterozygoteBlood ProteinsCalcineurinCNRIP1 protein, humanMembrane ProteinsPhosphoproteinsplatelet protein P47PPP3R1 protein, humanRNA, Messenger

Identifiers

PMID32337552
PMCPMC7268784
OpenAlexW3019909611

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.