Evidence map›Paper›PMID 32337471›Full record

ArticleEnvironmental epidemiology (Philadelphia, Pa.)2020

Assessing the impact of arsenic metabolism efficiency on DNA methylation using Mendelian randomization.

Anthony DiGiovanni, Kathryn Demanelis, Lin Tong, Maria Argos, Justin Shinkle, Farzana Jasmine, Mekala Sabarinathan, Muhammad Rakibuz-Zaman, Golam Sarwar, Md Tariqul Islam and 8 more

Open access · goldAbstract read
In one paragraph

Article in Environmental epidemiology (Philadelphia, Pa.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Anthony DiGiovanniDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Kathryn DemanelisDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Lin TongDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Maria ArgosDivision of Epidemiology and Biostatistics, University of Illinois at Chicago, Chicago, Illinois.
Justin ShinkleDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Farzana JasmineDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Mekala SabarinathanDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Muhammad Rakibuz-ZamanUChicago Research Bangladesh, Mohakhali, Dhaka, Bangladesh.
Golam SarwarUChicago Research Bangladesh, Mohakhali, Dhaka, Bangladesh.
Md Tariqul IslamUChicago Research Bangladesh, Mohakhali, Dhaka, Bangladesh.
Hasan ShahriarUChicago Research Bangladesh, Mohakhali, Dhaka, Bangladesh.
Tariqul IslamUChicago Research Bangladesh, Mohakhali, Dhaka, Bangladesh.
Mahfuzar RahmanUChicago Research Bangladesh, Mohakhali, Dhaka, Bangladesh.
Md YunusInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Joseph GrazianoDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York.
Mary V GambleDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York.
Habibul AhsanDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
Brandon L PierceDepartment of Public Health Sciences, The University of Chicago, Chicago, Illinois.
University of Chicago · USUniversity of Chicago Research Bangladesh · BDChicago Department of Public Health · USColumbia University · USBRAC · BDInternational Centre for Diarrhoeal Disease Research · BDUniversity of Illinois Chicago · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
Chemoprevention of arsenic-induced skin cancerR01CA107431 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2005 to 2014
$17.3M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
SPECIALIZED TRAINING PROGRAM IN THE DEMOGRAPHY &ECON.T32AG000243 · NIA · UNIVERSITY OF CHICAGO · PI DAVID O MELTZER · 1994 to 2026
$8.2M
Arsenic and the Human Genome: susceptibility and response to exposure Supplement 4R35ES028379 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2017 to 2024
$5.6M
Genetics of arsenic metabolism: fine-mapping and rare variant analysisR01ES023834 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2014 to 2017
$2.5M
Genetic Susceptibility to Arsenic-induced Skin CancerR01CA102484 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2004 to 2008
$2.0M
A Study of Telomeres in an Arsenic-Exposed Bangladesh CohortR01ES020506 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2011 to 2015
$1.9M
NCI NIH HHS P30 CA014599NCI NIH HHS R01 CA102484NCI NIH HHS R01 CA107431NIA NIH HHS T32 AG000243NIEHS NIH HHS P30 ES009089NIEHS NIH HHS P30 ES027792NIEHS NIH HHS P42 ES010349NIEHS NIH HHS R01 ES020506NIEHS NIH HHS R01 ES023834NIEHS NIH HHS R35 ES028379
6 · The paper itself

Abstract

backgroundArsenic exposure affects >100 million people globally and increases risk for chronic diseases. One possible toxicity mechanism is epigenetic modification. Previous epigenome-wide association studies (EWAS) have identified associations between arsenic exposure and CpG-specific DNA methylation. To provide additional evidence that observed associations represent causal relationships, we examine the association between genetic determinants of arsenic metabolism efficiency (percent dimethylarsinic acid, DMA%, in urine) and DNA methylation among individuals from the Health Effects of Arsenic Longitudinal Study (n = 379) and Bangladesh Vitamin E and Selenium Trial (n = 393).

methodsWe used multivariate linear models to assess the association of methylation at 221 arsenic-associated CpGs with DMA% and measures of genetically predicted DMA% derived from three SNPs (rs9527, rs11191527, and rs61735836). We also conducted two-sample Mendelian randomization analyses to estimate the association between arsenic metabolism efficiency and CpG methylation.

resultsAmong the associations between DMA% and methylation at each of 221 CpGs, 64% were directionally consistent with associations observed between arsenic exposure and the 221 CpGs from a prior EWAS. Similarly, among the associations between genetically predicted DMA% and each CpG, 62% were directionally consistent with the prior EWAS results. Two-sample Mendelian randomization analyses produced similar conclusions.

conclusionOur findings support the hypothesis that arsenic exposure effects DNA methylation at specific CpGs in whole blood. Our novel approach for assessing the impact of arsenic exposure on DNA methylation requires larger samples in order to draw more robust conclusions for specific CpG sites.

Indexed as

ArsenicBangladeshDNA methylationEpigenomicsMendelian randomization

Identifiers

PMID32337471
PMCPMC7147391
OpenAlexW3013653447

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.