Evidence map›Paper›PMID 32336757›Full record

ArticleAIChE journal. American Institute of Chemical Engineers2020

Computer-based Engineering of Thermostabilized Antibody Fragments.

Jiwon Lee, Bryan S Der, Christos S Karamitros, Wenzong Li, Nicholas M Marshall, Oana I Lungu, Aleksandr E Miklos, Jianqing Xu, Tae Hyun Kang, Chang-Han Lee and 9 more

Open access · greenAbstract read
In one paragraph

Article in AIChE journal. American Institute of Chemical Engineers, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Selection pressures on evolution of ribonuclease H explored with rigorous free-energy-based design.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Rational design of enzyme activity and enantioselectivity.Frontiers in bioengineering and biotechnology · 2023
    Review
  4. Review
  5. Article
  6. Leveraging intrinsic flexibility to engineer enhanced enzyme catalytic activity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. The stability and dynamics of computationally designed proteins.Protein engineering, design & selection : PEDS · 2022
    Review
  8. Article
  9. Toward Drug-Like Multispecific Antibodies by Design.International journal of molecular sciences · 2020
    Review
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Jiwon LeeThayer School of Engineering, Dartmouth College, Hanover, NH 03755.
Bryan S DerDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599.
Christos S KaramitrosDepartment of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Wenzong LiDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.
Nicholas M MarshallDepartment of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Oana I LunguDepartment of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Aleksandr E MiklosU.S. Army Combat Capabilities Development Command Chemical Biological Center, APGEA, MD 21010.
Jianqing XuDepartment of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MA 21218.
Tae Hyun KangBiopharmaceutical Chemistry Major, School of Applied Chemistry, Kookmin University, Seongbuk-gu, Seoul 02707, Republic of Korea.
Chang-Han LeeDepartment of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Bing TanDepartment of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Randall A HughesUS Army Research Laboratory, Austin, TX 78712.
Sang Taek JungDepartment of Biomedical Science, Graduate School of Medicine, Korea University, Seoul 02841, Republic of Korea.
Gregory C IppolitoDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.
Jeffrey J GrayDepartment of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MA 21218.
Yan ZhangDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.
Brian KuhlmanDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599.
George GeorgiouDepartment of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Andrew D EllingtonDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.
The University of Texas at Austin · USJohns Hopkins University · USUniversity of North Carolina at Chapel Hill · USDartmouth College · USKookmin University · KRKorea University · KRUnited States Army Combat Capabilities Development Command · USUnited States Department of the Army · US

Funding

Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
GPU workstation for deep learning-based protein design and cryo-EM data processingR35GM131923 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BRIAN A KUHLMAN · 2019 to 2026
$6.1M
Prediction of the Structure of Therapeutic Antibodies with their AntigensR01GM078221 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GRAY, JEFFREY J · 2006 to 2020
$4.0M
Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Interpretation of the phosphorylation code of RNA polymerase II during eukaryotic transcriptionR01GM125882 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S., ZHANG, YAN JESSIE · 2018 to 2021
$1.4M
NIGMS NIH HHS P20 GM113132NIGMS NIH HHS R01 GM078221NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM125882NIGMS NIH HHS R35 GM131923
6 · The paper itself

Abstract

We used the molecular modeling program Rosetta to identify clusters of amino acid substitutions in antibody fragments (scFvs and scAbs) that improve global protein stability and resistance to thermal deactivation. Using this methodology, we increased the melting temperature (T

Indexed as

antibody engineeringBiochemicalsBioengineeringBiofuelsBiomolecular EngineeringFood RosettascAbscFvthermostable antibodies

Identifiers

PMID32336757
PMCPMC7181397
OpenAlexW2989567843

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.