Evidence map›Paper›PMID 32335065›Full record

ArticleAnalytical biochemistry2020

Characteristic fragment ions associated with dansyl cadaverine and biotin cadaverine adducts on glutamine.

Kevser Biberoglu, Lawrence M Schopfer, Ozden Tacal, Oksana Lockridge

Abstract read
In one paragraph

Article in Analytical biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Kevser BiberogluHacettepe University, Faculty of Pharmacy, Biochemistry Department, 06230, Sihhiye, Ankara, Turkey. Electronic address: kevserb@hacettepe.edu.tr.
Lawrence M SchopferUniversity of Nebraska Medical Center, Omaha, NE, 68198, USA. Electronic address: lmschopf@unmc.edu.
Ozden TacalHacettepe University, Faculty of Pharmacy, Biochemistry Department, 06230, Sihhiye, Ankara, Turkey. Electronic address: tacal@hacettepe.edu.tr.
Oksana LockridgeUniversity of Nebraska Medical Center, Omaha, NE, 68198, USA. Electronic address: olockrid@unmc.edu.

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI James Eudy · 1985 to 2026
$55.0M
Crosslinking Action of Chlorpyrifos Oxon as Mechanism of Chronic IllnessR21ES030132 · NIEHS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LOCKRIDGE, OKSANA · 2020 to 2021
$419k
NCI NIH HHS P30 CA036727NIEHS NIH HHS R21 ES030132
6 · The paper itself

Abstract

Glutamine residues susceptible to transglutaminase-catalyzed crosslinking can be identified by incorporation of dansyl cadaverine or biotin cadaverine. Bacterial transglutaminase and human transglutaminase 2 were used to modify residues in beta-casein with dansyl cadaverine. Bacterial transglutaminase was used to modify residues in human butyrylcholinesterase with biotin cadaverine. Tryptic peptides were analyzed by LC-MS/MS on an Orbitrap Fusion Lumos mass spectrometer. Modified residues were identified in Protein Prospector searches of mass spectrometry data. The MS/MS spectra from modified casein included intense peaks at 336.2, 402.2, and 447.2 for fragments of dansyl cadaverine adducts on glutamine. The MS/MS spectra from modified butyrylcholinesterase included intense peaks at 329.2, 395.2, and 440.2 for fragments of biotin cadaverine adducts on glutamine. No evidence for transglutaminase-catalyzed adducts on glutamic acid, aspartic acid, or asparagine was found. Consistent with expectation, it was concluded that bacterial transglutaminase and human transglutaminase 2 specifically modify glutamine. The characteristic ions associated with dansyl cadaverine and biotin cadaverine adducts on glutamine are useful markers for modified peptides.

Indexed as

BiotinButyrylcholinesteraseCadaverineGlutamineHumansIonsStreptomycesTransglutaminasesBiotinButyrylcholinesteraseCadaverineGlutamineIonsTransglutaminasesBiotin cadaverineButyrylcholinesteraseCaseinDansyl cadaverineMass spectrometryProtein prospectorTransglutaminase

Identifiers

PMID32335065
PMCPMC7302536

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.