Evidence map›Paper›PMID 32333764›Full record

ArticleGenome biology and evolution2020

Transcriptomic Profiling Reveals Extraordinary Diversity of Venom Peptides in Unexplored Predatory Gastropods of the Genus Clavus.

Aiping Lu, Maren Watkins, Qing Li, Samuel D Robinson, Gisela P Concepcion, Mark Yandell, Zhiping Weng, Baldomero M Olivera, Helena Safavi-Hemami, Alexander E Fedosov

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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  11. Mobilizing molluscan models and genomes in biology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Aiping LuDepartment of Central Laboratory, Shanghai Tenth People's Hospital of Tongji University, School of Life Sciences and Technology, Tongji University, Shanghai, China.
Maren WatkinsDepartment of Biology, University of Utah.
Qing LiEccles Institute of Human Genetics, University of Utah.
Samuel D RobinsonDepartment of Biology, University of Utah.
Gisela P ConcepcionMarine Science Institute, University of the Philippines-Diliman, Quezon City, Philippines.
Mark YandellEccles Institute of Human Genetics, University of Utah.
Zhiping WengDepartment of Central Laboratory, Shanghai Tenth People's Hospital of Tongji University, School of Life Sciences and Technology, Tongji University, Shanghai, China.
Baldomero M OliveraDepartment of Biology, University of Utah.
Helena Safavi-HemamiDepartment of Biochemistry, University of Utah.
Alexander E FedosovA.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Science, Moscow, Russia.
University of Utah · USTongji University · CNSevertsov Institute of Ecology and Evolution · RUUniversity of Copenhagen · DKUniversity of the Philippines Diliman · PH

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI KATHARINE S ULLMAN · 1986 to 2026
$72.6M
Venoms, Biological Resources, Molecular BiologyP01GM048677 · NIGMS · UNIVERSITY OF UTAH · PI OLIVERA, BALDOMERO M · 1993 to 2018
$32.2M
Utah Center for Clinical and Translational ScienceUL1TR002538 · NCATS · UNIVERSITY OF UTAH · PI HESS, RACHEL, MAJERSIK, JENNIFER JUHL · 2018 to 2022
$26.0M
Diverse drug lead compounds from bacterial symbionts in tropical marine mollusksU01TW008163 · FIC · OREGON HEALTH & SCIENCE UNIVERSITY · PI HAYGOOD, MARGO GENEVIEVE · 2008 to 2013
$4.3M
Whole genome screen for novel regulators of tissue homeostasis and regenerationR01GM088269 · NIGMS · UNIVERSITY OF UTAH · PI LEWIS, SUZANNA E, SANCHEZ ALVARADO, ALEJANDRO · 2010 to 2013
$1.3M
FIC NIH HHS U01 TW008163NCATS NIH HHS UL1 TR002538NCI NIH HHS P30 CA042014NIGMS NIH HHS P01 GM048677
6 · The paper itself

Abstract

Predatory gastropods of the superfamily Conoidea number over 12,000 living species. The evolutionary success of this lineage can be explained by the ability of conoideans to produce complex venoms for hunting, defense, and competitive interactions. Whereas venoms of cone snails (family Conidae) have become increasingly well studied, the venoms of most other conoidean lineages remain largely uncharacterized. In the present study, we present the venom gland transcriptomes of two species of the genus Clavus that belong to the family Drilliidae. Venom gland transcriptomes of two specimens of Clavus canalicularis and two specimens of Clavus davidgilmouri were analyzed, leading to the identification of a total of 1,176 putative venom peptide toxins (drillipeptides). Based on the combined evidence of secretion signal sequence identity, entire precursor similarity search (BLAST), and the orthology inference, putative Clavus toxins were assigned to 158 different gene families. The majority of identified transcripts comprise signal, pro-, mature peptide, and post-regions, with a typically short (<50 amino acids) and cysteine-rich mature peptide region. Thus, drillipeptides are structurally similar to conotoxins. However, convincing homology with known groups of Conus toxins was only detected for very few toxin families. Among these are Clavus counterparts of Conus venom insulins (drillinsulins), porins (drilliporins), and highly diversified lectins (drillilectins). The short size of most drillipeptides and structural similarity to conotoxins were unexpected, given that most related conoidean gastropod families (Terebridae and Turridae) possess longer mature peptide regions. Our findings indicate that, similar to conotoxins, drillipeptides may represent a valuable resource for future pharmacological exploration.

Indexed as

Biological EvolutionGenetic VariationTranscriptomeAnimalsConus SnailMollusk VenomsPeptide FragmentsPhylogenyMollusk VenomsPeptide FragmentsClavusConoideadrillipeptidestranscriptomevenomvenom gland

Identifiers

PMID32333764
PMCPMC7259678
OpenAlexW3020237112

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.