Evidence map›Paper›PMID 32331438›Full record

ArticleViruses2020

HIV-1 Sub-Subtype A6: Settings for Normalised Identification and Molecular Epidemiology in the Southern Federal District, Russia.

Madita Schlösser, Vladimir V Kartashev, Visa H Mikkola, Andrey Shemshura, Sergey Saukhat, Dmitriy Kolpakov, Alexandr Suladze, Tatiana Tverdokhlebova, Katharina Hutt, Eva Heger and 8 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05663580 (Cohort Study of HIV-positive People, Treated With Long Acting Antiretroviral Therapy), which is not on this map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05663580 recruitingnot on this mapstarted 2022, after this paper: background citation

Cohort Study of HIV-positive People, Treated With Long Acting Antiretroviral Therapy (SCohoLART)

TypeobservationalSponsorCastagna AntonellaRan2022 to 2027Enrolled1,500ConditionsHIV InfectionsArmsCabotegravir 600mg/3mL, Rilpivirine 900mg/3mL
3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 4 countries.

Madita SchlösserInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.
Vladimir V KartashevRussian Southern Federal Center for HIV Control, 344000 Rostov-na-Donu, Russia.
Visa H MikkolaInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.ORCID 0000-0001-6730-4381
Andrey ShemshuraClinical Center of HIV/AIDS of the Ministry of Health of Krasnodar Region, 350015 Krasnodar, Russia.ORCID 0000-0003-1637-4229
Sergey SaukhatDepartment of Infectious Diseases, Rostov State Medical University, 344022 Rostov-na-Donu, Russia.ORCID 0000-0003-4900-3029
Dmitriy KolpakovRussian Southern Federal Center for HIV Control, 344000 Rostov-na-Donu, Russia.
Alexandr SuladzeRussian Southern Federal Center for HIV Control, 344000 Rostov-na-Donu, Russia.
Tatiana TverdokhlebovaRussian Southern Federal Center for HIV Control, 344000 Rostov-na-Donu, Russia.
Katharina HuttInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.
Eva HegerInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.
Elena KnopsInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.ORCID 0000-0001-7398-3026
Michael BöhmInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.ORCID 0000-0003-1208-8647
Veronica Di CristanzianoInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.
Rolf KaiserInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.
Anders SönnerborgDivision of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institutet, 17177 Stockholm, Sweden.
Maurizio ZazziDepartment of Medical Biotechnology, University of Siena, 53100 Siena, Italy.ORCID 0000-0002-0344-6281
Marina BobkovaDepartment of General Virology, Gamaleya Research Center of Epidemiology and Microbiology, 123098 Moscow, Russia.ORCID 0000-0001-5481-8957
Saleta SierraInstitute of Virology, Faculty of Medicine and University Hospital of Cologne, University of Cologne, 50935 Cologne, Germany.ORCID 0000-0001-8527-2790
University of Cologne · DESouthern Federal University · RUGamalei Institute of Epidemiology and Microbiology · RUKarolinska Institutet · SEMinistry of Health of the Russian Federation · RURostov State Medical University · RUUniversity of Siena · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Russia has one of the largest and fastest growing HIV epidemics. However, epidemiological data are scarce. Sub-subtype A6 is most prevalent in Russia but its identification is challenging. We analysed protease/reverse transcriptase-, integrase-sequences, and epidemiological data from 303 patients to develop a methodology for the systematisation of A6 identification and to describe the HIV epidemiology in the Russian Southern Federal District. Drug consumption (32.0%) and heterosexual contact (27.1%) were the major reported transmission risks. This study successfully established the settings for systematic identification of A6 samples. Low frequency of subtype B (3.3%) and large prevalence of sub-subtype A6 (69.6%) and subtype G (23.4%) were detected. Transmitted PI- (8.8%) and NRTI-resistance (6.4%) were detected in therapy-naive patients. In therapy-experienced patients, 17.3% of the isolates showed resistance to PIs, 50.0% to NRTI, 39.2% to NNRTIs, and 9.5% to INSTIs. Multiresistance was identified in 52 isolates, 40 corresponding to two-class resistance and seven to three-class resistance. Two resistance-associated-mutations significantly associated to sub-subtype A6 samples: A62V

Indexed as

Drug Resistance, ViralFemaleGenotypeHIV-1HIV InfectionsHumansMaleMicrobial Sensitivity TestsMolecular EpidemiologyMutationPublic Health SurveillanceRNA, ViralRussiaRNA, ViralA6A-FSUdrug resistanceepidemiologyHIVIDU-ARussiasubtyping

Identifiers

PMID32331438
PMCPMC7232409
OpenAlexW3020488037

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.