Evidence map›Paper›PMID 32330418›Full record

ArticleAmerican journal of human genetics2020

Non-coding and Loss-of-Function Coding Variants in TET2 are Associated with Multiple Neurodegenerative Diseases.

J Nicholas Cochran, Ethan G Geier, Luke W Bonham, J Scott Newberry, Michelle D Amaral, Michelle L Thompson, Brittany N Lasseigne, Anna M Karydas, Erik D Roberson, Gregory M Cooper and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Integrative genomic and functional analyses reveal NINL as a modulator of tau aggregation.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. An Update on Neuroaging on Earth and in Spaceflight.International journal of molecular sciences · 2025
    Review
  11. The genetic landscape of early-onset Alzheimer's disease in China.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  12. Chromatin modifiers in neurodevelopment.Frontiers in molecular neuroscience · 2025
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Science advances · 2024
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

J Nicholas CochranHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.
Ethan G GeierMemory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, United States.
Luke W BonhamMemory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, United States.
J Scott NewberryHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.
Michelle D AmaralHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.
Michelle L ThompsonHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.
Brittany N LasseigneHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States; Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, Birmingham, AL 35294, United States.
Anna M KarydasMemory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, United States.
Erik D RobersonCenter for Neurodegeneration and Experimental Therapeutics, Alzheimer's Disease Center, Departments of Neurology and Neurobiology, University of Alabama at Birmingham, Birmingham, AL 35294, United States.
Gregory M CooperHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.
Gil D RabinoviciMemory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, United States; Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA 94158, United States.
Bruce L MillerMemory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, United States.
Richard M MyersHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.
Jennifer S YokoyamaMemory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, United States; Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA 94158, United States. Electronic address: jennifer.yokoyama@ucsf.edu.
Alzheimer’s Disease Neuroimaging Initiative
HudsonAlpha Institute for Biotechnology · USUniversity of California, San Francisco · USUniversity of Alabama at Birmingham · US

Funding

Research Education ComponentP30AG062422 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOWARD J ROSEN · 2019 to 2026
$36.9M
PrPSc SPECIFIC INTERACTION WITH NOVEL PrP-Fc FUSION PROTEINSP50AG023501 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MILLER, BRUCE L · 2004 to 2018
$27.1M
Elucidating clinical heterogeneity in early-onset AD via genomics, transcriptomics, and neuroimagingR01AG062588 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YOKOYAMA, JENNIFER S · 2019 to 2023
$4.0M
Early Age-of-Onset AD: Clinical Heterogeneity and Network DegenerationR01AG045611 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RABINOVICI, GIL DAN · 2014 to 2018
$3.1M
RNA signatures of frontotemporal dementia and ALS due to C9ORF72 expansionK01AG049152 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YOKOYAMA, JENNIFER S · 2015 to 2019
$648k
Austrian Science Fund FWF I 904NIA NIH HHS K01 AG049152NIA NIH HHS P30 AG062422NIA NIH HHS P50 AG023501NIA NIH HHS R01 AG045611NIA NIH HHS R01 AG062588
6 · The paper itself

Abstract

We conducted genome sequencing to search for rare variation contributing to early-onset Alzheimer's disease (EOAD) and frontotemporal dementia (FTD). Discovery analysis was conducted on 435 cases and 671 controls of European ancestry. Burden testing for rare variation associated with disease was conducted using filters based on variant rarity (less than one in 10,000 or private), computational prediction of deleteriousness (CADD) (10 or 15 thresholds), and molecular function (protein loss-of-function [LoF] only, coding alteration only, or coding plus non-coding variants in experimentally predicted regulatory regions). Replication analysis was conducted on 16,434 independent cases and 15,587 independent controls. Rare variants in TET2 were enriched in the discovery combined EOAD and FTD cohort (p = 4.6 × 10

Indexed as

AgedAged, 80 and overAlzheimer DiseaseAnimalsCognitionDioxygenasesDNA-Binding ProteinsFemaleFrontotemporal DementiaHumansLoss of Function MutationMaleMiceNeurodegenerative DiseasesProto-Oncogene ProteinsDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTET2 protein, humanADagingALSAlzheimeramyotrophic lateral sclerosisfrontotemporal dementiaFTDgenome sequencingnon-codingTET2

Identifiers

PMID32330418
PMCPMC7212268
OpenAlexW3020572257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.