Evidence map›Paper›PMID 32328080›Full record

ArticleFrontiers in plant science2020

Genome-Wide Association Study and Genomic Prediction Elucidate the Distinct Genetic Architecture of Aluminum and Proton Tolerance in

Yuki Nakano, Kazutaka Kusunoki, Owen A Hoekenga, Keisuke Tanaka, Satoshi Iuchi, Yoichi Sakata, Masatomo Kobayashi, Yoshiharu Y Yamamoto, Hiroyuki Koyama, Yuriko Kobayashi

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
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  9. An allelic variant in the ACS7 gene promotes primary root growth in watermelon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  10. Article
  11. Expression GWAS ofFrontiers in plant science · 2021
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Yuki NakanoFaculty of Applied Biological Sciences, Gifu University, Gifu, Japan.
Kazutaka KusunokiFaculty of Applied Biological Sciences, Gifu University, Gifu, Japan.
Owen A HoekengaCayuga Genetics Consulting Group LLC, Ithaca, NY, United States.
Keisuke TanakaNODAI Genome Research Center, Tokyo University of Agriculture, Tokyo, Japan.
Satoshi IuchiExperimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Japan.
Yoichi SakataDepartment of Bioscience, Tokyo University of Agriculture, Tokyo, Japan.
Masatomo KobayashiExperimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Japan.
Yoshiharu Y YamamotoFaculty of Applied Biological Sciences, Gifu University, Gifu, Japan.
Hiroyuki KoyamaFaculty of Applied Biological Sciences, Gifu University, Gifu, Japan.
Yuriko KobayashiFaculty of Applied Biological Sciences, Gifu University, Gifu, Japan.
Gifu University · JPRIKEN BioResource Research Center · JPTokyo University of Agriculture · JPIthaca College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Under acid soil conditions, Al stress and proton stress can occur, reducing root growth and function. However, these stressors are distinct, and tolerance to each is governed by multiple physiological processes. To better understand the genes that underlie these coincidental but experimentally separable stresses, a genome-wide association study (GWAS) and genomic prediction (GP) models were created for approximately 200 diverse

Indexed as

acid soil toleranceALMT1aluminum and proton toleranceco-expression network analysisELP – expression level polymorphismGP – genomic predictionGWAS – genome-wide association studynatural variation

Identifiers

PMID32328080
PMCPMC7160251
OpenAlexW3015932292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.