Evidence map›Paper›PMID 32327716›Full record

ArticleScientific reports2020

Admixture and natural selection shaped genomes of an Austronesian-speaking population in the Solomon Islands.

Mariko Isshiki, Izumi Naka, Yusuke Watanabe, Nao Nishida, Ryosuke Kimura, Takuro Furusawa, Kazumi Natsuhara, Taro Yamauchi, Minato Nakazawa, Takafumi Ishida and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. New insights into human immunity from ancient genomics.Current opinion in immunology · 2021
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 1 country.

Mariko IsshikiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan.
Izumi NakaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan.
Yusuke WatanabeDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan.
Nao NishidaGenome Medical Science Project, Research Center for Hepatitis and Immunology, National Center for Global Health and Medicine, Chiba, 272-8516, Japan.
Ryosuke KimuraDepartment of Human Biology and Anatomy, Graduate School of Medicine, University of the Ryukyus, Nishihara, 903-0125, Japan.ORCID http://orcid.org/0000-0003-0100-273X
Takuro FurusawaGraduate School of Asian and African Area Studies, Kyoto University, Kyoto, 606-8501, Japan.
Kazumi NatsuharaDepartment of International Health and Nursing, Faculty of Nursing, Toho University, Tokyo, 143-8540, Japan.
Taro YamauchiFaculty of Health Sciences, Hokkaido University, Sapporo, 060-0812, Japan.
Minato NakazawaGraduate School of Health Sciences, Kobe University, Kobe, 654-0142, Japan.ORCID http://orcid.org/0000-0003-2345-8455
Takafumi IshidaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan.
Ricky EddieNational Gizo Hospital, Ministry of Health and Medical Services, P.O. Box 36, Gizo, Solomon Islands.
Ryutaro OhtsukaJapan Wildlife Research Center, Tokyo, 130-8606, Japan.
Jun OhashiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan. juno-tky@umin.ac.jp.
The University of Tokyo · JPJapan Wildlife Research Center · JPJuntendo University · JPKobe University · JPKyoto University · JPNational Center for Global Health and Medicine · JPSapporo University · JPToho University · JPUniversity of the Ryukyus · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

People in the Solomon Islands today are considered to have derived from Asian- and Papuan-related ancestors. Papuan-related ancestors colonized Near Oceania about 47,000 years ago, and Asian-related ancestors were Austronesian (AN)-speaking population, called Lapita, who migrated from Southeast Asia about 3,500 years ago. These two ancestral populations admixed in Near Oceania before the expansion of Lapita people into Remote Oceania. To understand the impact of the admixture on the adaptation of AN-speaking Melanesians in Near Oceania, we performed the genome-wide single nucleotide polymorphism (SNP) analysis of 21 individuals from Munda, the main town of the New Georgia Islands in the western Solomon Islands. Population samples from Munda were genetically similar to other Solomon Island population samples. The analysis of genetic contribution from the two different ancestries to the Munda genome revealed significantly higher proportions of Asian- and Papuan-related ancestries in the region containing the annexin A1 (ANXA1) gene (Asian component > 82.6%) and in the human leukocyte antigen (HLA) class II region (Papuan component > 85.4%), respectively. These regions were suspected to have undergone natural selection since the time of admixture. Our results suggest that admixture had affected adaptation of AN-speaking Melanesians in the Solomon Islands.

Indexed as

Gene PoolGenome, HumanPacific Island PeopleSelection, GeneticChromosomes, Human, Pair 6Computer SimulationHumansImmunityMelanesiaPapua New GuineaPhylogenyPrincipal Component Analysis

Identifiers

PMID32327716
PMCPMC7181741
OpenAlexW3017786619

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.