Evidence map›Paper›PMID 32327641›Full record

ArticleNature communications2020

Sex chromosome evolution in parasitic nematodes of humans.

Jeremy M Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A Cotton, Tyson A Clark, Adam Geber, Nancy Holroyd and 13 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  9. Syntenic relationship of chromosomes inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  10. Review
  11. Dual RNA-seq in filarial nematodes andFrontiers in microbiology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
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  19. MultipleGenome research · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 2 countries.

Jeremy M Foster *Division of Protein Expression & Modification, New England Biolabs, Ipswich, MA, 01938, USA.ORCID http://orcid.org/0000-0001-5107-6513
Alexandra Grote *Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.
John Mattick *Institute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Alan TraceyWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.ORCID http://orcid.org/0000-0002-4805-9058
Yu-Chih TsaiPacific Biosciences, Menlo Park, CA, 94025, USA.ORCID http://orcid.org/0000-0002-2958-0278
Matthew ChungInstitute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.ORCID http://orcid.org/0000-0002-9545-523X
James A CottonWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
Tyson A ClarkPacific Biosciences, Menlo Park, CA, 94025, USA.
Adam GeberDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.ORCID http://orcid.org/0000-0003-3022-0525
Nancy HolroydWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
Jonas KorlachPacific Biosciences, Menlo Park, CA, 94025, USA.ORCID http://orcid.org/0000-0003-3047-4250
Yichao LiSchool of Electrical Engineering and Computer Science, Ohio University, Athens, OH, 45701, USA.ORCID http://orcid.org/0000-0001-5791-096X
Silvia LibroDivision of Protein Expression & Modification, New England Biolabs, Ipswich, MA, 01938, USA.
Sara LustigmanLaboratory of Molecular Parasitology, Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0003-2389-6113
Michelle L MichalskiDepartment of Biology and Microbiology, University of Wisconsin Oshkosh, Oshkosh, WI, 54901, USA.
Michael PauliniEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Matthew B RogersDepartment of Surgery, UPMC Children's Hospital of Pittsburgh, Pittsburgh, PA, 15224, USA.
Laura TeigenDepartment of Biology and Microbiology, University of Wisconsin Oshkosh, Oshkosh, WI, 54901, USA.
Alan TwaddleDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.
Lonnie WelchSchool of Electrical Engineering and Computer Science, Ohio University, Athens, OH, 45701, USA.ORCID http://orcid.org/0000-0001-6419-9416
Matthew BerrimanWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.ORCID http://orcid.org/0000-0002-9581-0377
Julie C Dunning HotoppInstitute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA. jdhotopp@som.umaryland.edu.ORCID http://orcid.org/0000-0003-3862-986X
Elodie GhedinDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA. elodie.ghedin@nyu.edu.ORCID http://orcid.org/0000-0002-1515-725X
New York University · USWellcome Sanger Institute · GBPacific Biosciences (United States) · USUniversity of Maryland, Baltimore · USNew England Biolabs (United States) · USOhio University · USUniversity of Wisconsin–Oshkosh · USChildren's Hospital of Pittsburgh · USEuropean Bioinformatics Institute · GBNew York Blood Center · US

Funding

Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI DUNNING HOTOPP, JULIE · 2014 to 2023
$36.5M
Host-pathogen interactions in filarial worm infectionsZIAAI001322 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI GHEDIN, ELODIE · 2020 to 2025
$6.7M
Medical Research Council MR/L001020/1NIAID NIH HHS U19 AI110820Wellcome Trust 098051
6 · The paper itself

Abstract

Sex determination mechanisms often differ even between related species yet the evolution of sex chromosomes remains poorly understood in all but a few model organisms. Some nematodes such as Caenorhabditis elegans have an XO sex determination system while others, such as the filarial parasite Brugia malayi, have an XY mechanism. We present a complete B. malayi genome assembly and define Nigon elements shared with C. elegans, which we then map to the genomes of other filarial species and more distantly related nematodes. We find a remarkable plasticity in sex chromosome evolution with several distinct cases of neo-X and neo-Y formation, X-added regions, and conversion of autosomes to sex chromosomes from which we propose a model of chromosome evolution across different nematode clades. The phylum Nematoda offers a new and innovative system for gaining a deeper understanding of sex chromosome evolution.

Indexed as

Evolution, MolecularAnimalsBrugia malayiCaenorhabditis elegansChromosome MappingFemaleGene Expression RegulationGenome, HelminthHumansMaleNematodaNematode InfectionsRepetitive Sequences, Nucleic AcidSex ChromosomesSex Determination Processes

Identifiers

PMID32327641
PMCPMC7181701
OpenAlexW3019059103

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.