Evidence map›Paper›PMID 32325908›Full record

ArticleMicroorganisms2020

Genome-Wide Analysis of Sugar Transporters Identifies the

Yaqun Liu, Liguo Shang, Yuhua Zhan, Min Lin, Zhu Liu, Yongliang Yan

Abstract read
In one paragraph

Article in Microorganisms, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Transcriptome Analysis ofMicroorganisms · 2024
    Article
  6. Article
  7. Genomic insights and functional evaluation ofFrontiers in microbiology · 2024
    Article
  8. Sugar Transporters inInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yaqun LiuSchool of Life and Pharmaceutical Sciences, Hainan University, Haikou 570100, China.
Liguo ShangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Yuhua ZhanBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Min LinBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Zhu LiuSchool of Life and Pharmaceutical Sciences, Hainan University, Haikou 570100, China.
Yongliang YanBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.

Funding

Central Public-interest Scientific Institution Basal Research Fund No. Y2020GH04-3National Key R&D Program of China No. 2019YFA0904700National Natural Science Foundation of China Nos. 31770067 and 31930004
6 · The paper itself

Abstract

Pseudomonas stutzeri A1501 possesses an extraordinary number of transporters which confer this rhizosphere bacterium with the sophisticated ability to metabolize various carbon sources. However, sugars are not a preferred carbon source for P. stutzeri A1501. The P. stutzeri A1501 genome has been sequenced, allowing for the homology-based in silico identification of genes potentially encoding sugar-transport systems by using established microbial sugar transporters as a template sequence. Genomic analysis revealed that there were 10 sugar transporters in P. stutzeri A1501, most of which belong to the ATP-binding cassette (ABC) family (5/10); the others belong to the phosphotransferase system (PTS), major intrinsic protein (MIP) family, major facilitator superfamily (MFS) and the sodium solute superfamily (SSS). These systems might serve for the import of glucose, galactose, fructose and other types of sugar. Growth analysis showed that the only effective medium was glucose and its corresponding metabolic system was relatively complete. Notably, the loci of glucose metabolism regulatory systems HexR, GltR/GtrS, and GntR were adjacent to the transporters ABC

Indexed as

biological nitrogen fixationglucosegtsA genePseudomonas stutzeri A1501sugar-transport system

Identifiers

PMID32325908
PMCPMC7232493

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.