Evidence map›Paper›PMID 32324754›Full record

ArticlePloS one2020

Feature engineering with clinical expert knowledge: A case study assessment of machine learning model complexity and performance.

Kenneth D Roe, Vibhu Jawa, Xiaohan Zhang, Christopher G Chute, Jeremy A Epstein, Jordan Matelsky, Ilya Shpitser, Casey Overby Taylor

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Body Surface Potential Mapping: A Perspective on High-Density Cutaneous Electrophysiology.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  8. Article
  9. Towards equitable AI in oncology.Nature reviews. Clinical oncology · 2024
    Review
  10. Article
  11. Article
  12. Review
  13. Deep learning in bioinformatics.Turkish journal of biology = Turk biyoloji dergisi · 2023
    Article
  14. Article
  15. Recurrent preterm birth risk assessment for two delivery subtypes: A multivariable analysis.Journal of the American Medical Informatics Association : JAMIA · 2022
    Article
  16. Learning Predictive and Interpretable Timeseries Summaries from ICU Data.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2021
    Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kenneth D RoeJohns Hopkins Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, United States of America.ORCID 0000-0002-2619-8911
Vibhu JawaJohns Hopkins Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, United States of America.ORCID 0000-0003-4540-8344
Xiaohan ZhangDivision of Health Sciences Informatics, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Christopher G ChuteJohns Hopkins Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, United States of America.ORCID 0000-0001-5437-2545
Jeremy A EpsteinDivision of General Internal Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0003-4435-7178
Jordan MatelskyJohns Hopkins University Applied Physics Laboratory, Laurel, MD, United States of America.
Ilya ShpitserJohns Hopkins Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, United States of America.
Casey Overby TaylorJohns Hopkins Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, United States of America.

Funding

Biomedical Data Translator Technical Feasibility Assessment and Architecture DesignOT3TR002026 · NCATS · INSTITUTE FOR SYSTEMS BIOLOGY · PI GLUSMAN, GWÊNLYN, HUANG, SUI · 2016 to 2019
$3.3M
Biomedical Data Translator Technical Feasibility Assessment and Architecture DesignOT3TR002020 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AHALT, STANLEY CARLTON, TROPSHA, ALEXANDER · 2016 to 2019
$3.1M
Biomedical Data Translator Technical Feasibility Assessment and Architecture DesignOT3TR002027 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DUMONTIER, MICHEL, TATONETTI, NICHOLAS P · 2016 to 2019
$2.7M
Biomedical Data Translator Technical Feasibility Assessment of Reasoning Tool: University of North Carolina at Chapel HillOT2TR002514 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TROPSHA, ALEXANDER · 2018 to 2019
$2.0M
Biomedical Data Translator Technical Feasibility Assessment of Reasoning Tool: Broad InstituteOT2TR002584 · NCATS · BROAD INSTITUTE, INC. · PI CLEMONS, PAUL ANDREW · 2018 to 2019
$1.6M
Biomedical Data Translator Technical Feasibility Assessment of Reasoning Tool: Oregon State UniversityOT2TR002520 · NCATS · OREGON STATE UNIVERSITY · PI DEUTSCH, ERIC, RAMSEY, STEPHEN A. · 2018 to 2019
$1.4M
Biomedical Data Translator Technical Feasibility Assessment of Reasoning Tool: University of Alabama at BirminghamOT2TR002517 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MIGHT, MATTHEW BRENDON · 2018 to 2019
$1.1M
Biomedical Data Translator Technical Feasibility Assessment and Architecture DesignOT3TR002025 · NCATS · BROAD INSTITUTE, INC. · PI CLEMONS, PAUL ANDREW · 2016 to 2017
$1.1M
Biomedical Data Translator Technical Feasibility Assessment of Reasoning Tool: Stanford UniversityOT2TR002515 · NCATS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2018 to 2019
$845k
NCATS NIH HHS OT2 TR002514NCATS NIH HHS OT2 TR002515NCATS NIH HHS OT2 TR002517NCATS NIH HHS OT2 TR002520NCATS NIH HHS OT2 TR002584NCATS NIH HHS OT3 TR002020NCATS NIH HHS OT3 TR002025NCATS NIH HHS OT3 TR002026NCATS NIH HHS OT3 TR002027
6 · The paper itself

Abstract

Incorporating expert knowledge at the time machine learning models are trained holds promise for producing models that are easier to interpret. The main objectives of this study were to use a feature engineering approach to incorporate clinical expert knowledge prior to applying machine learning techniques, and to assess the impact of the approach on model complexity and performance. Four machine learning models were trained to predict mortality with a severe asthma case study. Experiments to select fewer input features based on a discriminative score showed low to moderate precision for discovering clinically meaningful triplets, indicating that discriminative score alone cannot replace clinical input. When compared to baseline machine learning models, we found a decrease in model complexity with use of fewer features informed by discriminative score and filtering of laboratory features with clinical input. We also found a small difference in performance for the mortality prediction task when comparing baseline ML models to models that used filtered features. Encoding demographic and triplet information in ML models with filtered features appeared to show performance improvements from the baseline. These findings indicated that the use of filtered features may reduce model complexity, and with little impact on performance.

Indexed as

Machine LearningAsthmaHealth Knowledge, Attitudes, PracticeHumansPrognosis

Identifiers

PMID32324754
PMCPMC7179831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.