ArticlePloS one2020
The complete mitochondrial genome of the endangered Assam Roofed Turtle, Pangshura sylhetensis (Testudines: Geoemydidae): Genomic features and phylogeny.
Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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11 citing papers in PubMed, 19 citations in OpenAlex.
- Lineages to landscapes: mitogenomic insights and climate refugia informing proactive conservation of the endangered Tricarinate Hill Turtle (Melanochelys tricarinata) in the Indian subcontinent.Scientific reports · 2025Article
- Unveiling the contemporary genetic diversity and population demography of the critically endangered northern river terrapin (Batagur baska) in the sundarbans.Molecular biology reports · 2025Article
- Unveiling the Evolutionary Lineages and Habitat Dynamics of the Monotypic Crowned River TurtleEcology and evolution · 2025Article
- A Genomic-Based Workflow for eDNA Assay Development for a Critically Endangered Turtle,Ecology and evolution · 2025Article
- The Characterization of Mitochondrial Genome of Spotted Pond Turtle (Geoclemys hamiltonii).Biochemical genetics · 2024Article
- The first complete mitochondrial genome of the critically endangered Malaysian giant turtle,Journal of genetics · 2024Article
- Article
- Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin,Mitochondrial DNA. Part B, Resources · 2023Article
- De novo mitochondrial genome sequencing of Cladonia subulata and phylogenetic analysis with other dissimilar species.PloS one · 2023Article
- Complete mitogenome of the endangered and endemic Nicobar treeshrew (Tupaia nicobarica) and comparison with other Scandentians.Scientific reports · 2022Article
- Complete mitochondrial genome of critically endangeredMitochondrial DNA. Part B, Resources · 2021Article
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Authors and funding
4 authors at 1 institution in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
The Assam Roofed Turtle, Pangshura sylhetensis is an endangered and least studied species endemic to India and Bangladesh. The present study decodes the first complete mitochondrial genome of P. sylhetensis (16,568 bp) by using next-generation sequencing. The assembly encodes 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and one control region (CR). Most of the genes were encoded on the majority strand, except NADH dehydrogenase subunit 6 (nad6) and eight tRNAs. All PCGs start with an ATG initiation codon, except for Cytochrome oxidase subunit 1 (cox1) and NADH dehydrogenase subunit 5 (nad5), which both start with GTG codon. The study also found the typical cloverleaf secondary structures in most of the predicted tRNA structures, except for serine (trnS1) which lacks of conventional DHU arm and loop. Both Bayesian and maximum-likelihood phylogenetic inference using 13 concatenated PCGs demonstrated strong support for the monophyly of all 52 Testudines species within their respective families and revealed Batagur trivittata as the nearest neighbor of P. sylhetensis. The mitogenomic phylogeny with other amniotes is congruent with previous research, supporting the sister relationship of Testudines and Archosaurians (birds and crocodilians). Additionally, the mitochondrial Gene Order (GO) analysis indicated plesiomorphy with the typical vertebrate GO in most of the Testudines species.
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