Evidence map›Paper›PMID 32322373›Full record

ArticleIranian journal of microbiology2020

Genome diversity and evolutionary characteristics of clinical isolates of

Samaneh Saedi, Azadeh Safarchi, Mojtaba Noofeli, Keyvan Tadayon, Alfred Chin Yen Tay, Binit Lamichhane, Hamzeh Rahimi, Fereshteh Shahcheraghi

Abstract read
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In one paragraph

Article in Iranian journal of microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Vaccine antigen-based genotyping ofMicrobiology spectrum · 2025
    Article
  3. [Pertussis worldwide. Vaccinating children and adults].Medecine tropicale et sante internationale · 2023
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Samaneh SaediDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Azadeh SafarchiDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.
Mojtaba NoofeliDepartment of Human Bacterial Vaccine, Razi Vaccine & Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.
Keyvan TadayonDepartment of Aerobic Bacterial Research and Vaccine Production, Razi Vaccine & Serum Research Institute, Karaj, Iran.
Alfred Chin Yen TayThe Marshall Centre for Infectious Diseases Research and Training, The University of Western Australia, Nedlands, Western Australia, Australia.
Binit LamichhaneThe Marshall Centre for Infectious Diseases Research and Training, The University of Western Australia, Nedlands, Western Australia, Australia.
Hamzeh RahimiDepartment of Molecular Medicine, Pasteur Institute of Iran, Tehran, Iran.
Fereshteh ShahcheraghiDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Iran.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

objectivesThe re-emergence of pertussis still is being reported all over the world. Pathogen adaptation and antigenic divergence of circulating isolates from vaccine strains are the main reasons of infection resurgence. Waning immunity is also an important factor contributing to resurgence of pertussis. MATERIALS AND

methodsThe genetic diversity and evolutionary characteristics of circulating Iranian isolates of

resultsPFGE differentiated 62 clinical isolates and vaccine and reference strains into 19 PFGE profiles, indicating the higher level of heterogeneity in the population during 2015-2018. The predominant

conclusionNo changes in allelic profile of predominant clone in recent years was observed but antigenic divergence between recently circulating isolates and the vaccine strain has been progressed and significantly was higher than previous studies. The comparative genomic analysis of the

Indexed as

Bordetella pertussisGenome diversityPulsed-field gel electrophoresisWhole genome sequencing

Identifiers

PMID32322373
PMCPMC7163038

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.