Evidence map›Paper›PMID 32321736›Full record

ArticleCold Spring Harbor molecular case studies2020

De novo duplication on Chromosome 19 observed in nuclear family displaying neurodevelopmental disorders.

Calvin P Sjaarda, Beatrice Kaiser, Amy J M McNaughton, Melissa L Hudson, Liam Harris-Lowe, Kyle Lou, Andrea Guerin, Muhammad Ayub, Xudong Liu

Open access · diamondAbstract read
In one paragraph

Article in Cold Spring Harbor molecular case studies, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Calvin P SjaardaQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.ORCID 0000-0002-9787-1915
Beatrice KaiserQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.
Amy J M McNaughtonQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.
Melissa L HudsonQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.
Liam Harris-LoweQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.
Kyle LouQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.
Andrea GuerinDivision of Medical Genetics, Department of Pediatrics, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Muhammad AyubDepartment of Psychiatry, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Xudong LiuQueen's Genomics Laboratory at Ongwanada (QGLO), Ongwanada Resource Center, Kingston, Ontario K7M 8A6, Canada.
Queen's University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pleiotropy and variable expressivity have been cited to explain the seemingly distinct neurodevelopmental disorders due to a common genetic etiology within the same family. Here we present a family with a de novo 1-Mb duplication involving 18 genes on Chromosome 19. Within the family there are multiple cases of neurodevelopmental disorders including autism spectrum disorder, attention deficit/hyperactivity disorder, intellectual disability, and psychiatric disease in individuals carrying this copy-number variant (CNV). Quantitative polymerase chain reaction (PCR) confirmed the CNV was de novo in the mother and inherited by both sons. Whole-exome sequencing did not uncover further genetic risk factors segregating within the family. Transcriptome analysis of peripheral blood demonstrated a ∼1.5-fold increase in RNA transcript abundance in 12 of the 15 detected genes within the CNV region for individuals carrying the CNV compared with their noncarrier relatives. Examination of transcript abundance across the rest of the transcriptome identified 407 differentially expressed genes (

Indexed as

Chromosomes, Human, Pair 19FamilyGene DuplicationGenetic Association StudiesGenetic Predisposition to DiseaseComparative Genomic HybridizationDNA Copy Number VariationsFaciesFemaleGene DosageGene Expression ProfilingGenes, EssentialHumansMaleNeurodevelopmental DisordersPedigreeRNA, Messengerautismborderline personality disorderimmune dysregulationintellectual disability, severemicroretrognathia

Identifiers

PMID32321736
PMCPMC7304355
OpenAlexW3020443697

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.