Evidence map›Paper›PMID 32319217›Full record

ArticleProteomics. Clinical applications2020

SWATH-Proteomics of Ibrutinib's Action in Myeloid Leukemia Initiating Mutated G-CSFR Signaling.

Pankaj Dwivedi, Somchai Chutipongtanate, David E Muench, Mohammad Azam, Harry Leighton Grimes, Kenneth D Greis

Open access · greenAbstract read
In one paragraph

Article in Proteomics. Clinical applications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Pankaj DwivediDepartment of Cancer Biology, University of Cincinnati, Cincinnati, OH, 45267, USA.
Somchai ChutipongtanateDepartment of Cancer Biology, University of Cincinnati, Cincinnati, OH, 45267, USA.
David E MuenchDivision of Immunobiology and Center for Systems Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45267, USA.
Mohammad AzamDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45267, USA.
Harry Leighton GrimesDivision of Immunobiology and Center for Systems Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45267, USA.
Kenneth D GreisDepartment of Cancer Biology, University of Cincinnati, Cincinnati, OH, 45267, USA.ORCID 0000-0002-5316-3351
Cincinnati Children's Hospital Medical Center · USUniversity of Cincinnati · USMahidol University · TH

Funding

REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 1992 to 2022
$35.4M
ENVIRONMETAL CARCINOGENESIS AND MUTAGENESIST32ES007250 · NIEHS · UNIVERSITY OF CINCINNATI · PI MILLER, WILLIAM E · 1988 to 2024
$11.9M
A rapid spontaneous murine model of CN-AMLR01CA196658 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI GRIMES, H. LEIGHTON · 2016 to 2018
$2.2M
Enhanced proteomics capabilities for quantitation of proteins with a triple quadS10RR027015 · NCRR · UNIVERSITY OF CINCINNATI · PI GREIS, KENNETH DONALD · 2010 to 2010
$426k
NCI NIH HHS CA196658NCI NIH HHS R01 CA196658NCRR NIH HHS S10 RR027015NIEHS NIH HHS ES007250NIEHS NIH HHS P30 ES006096NIEHS NIH HHS T32 ES007250NIH HHS 1S10 RR027015-01
6 · The paper itself

Abstract

purposeTo evaluate cellular protein changes in response to treatment with an approved drug, ibrutinib, in cells expressing normal or mutated granulocyte-colony stimulating factor receptor (G-CSFR). G-CSFR mutations are associated with some hematological malignancies. Previous studies show the efficacy of ibrutinib (a Bruton's tyrosine kinase inhibitor) in mutated G-CSFR leukemia models but do not address broader signaling mechanisms. EXPERIMENTAL

designA label-free quantitative proteomics workflow to evaluate the cellular effects of ibrutinib treatment is established. This includes three biological replicates of normal and mutated G-CSFR expressed in a mouse progenitor cell (32D cell line) with and without ibrutinib treatment.

resultsThe proteomics dataset shows about 1000 unique proteins quantified with nearly 400 significant changes (p value < 0.05), suggesting a highly dynamic network of cellular signaling in response to ibrutinib. Importantly, the dataset is very robust with coefficients of variation for quantitation at 13.0-20.4% resulting in dramatic patterns of protein differences among the groups. CONCLUSIONS AND CLINICAL RELEVANCE: This robust dataset is available for further mining, hypothesis generation, and testing. A detailed understanding of the restructuring of the proteomics signaling cascades by ibrutinib in leukemia biology will provide new avenues to explore its use for other related malignancies.

Indexed as

MutationProteomicsAdenineCell Line, TumorGene Expression Regulation, NeoplasticHumansLeukemia, MyeloidPiperidinesReceptors, Granulocyte Colony-Stimulating FactorSignal TransductionAdenineibrutinibPiperidinesReceptors, Granulocyte Colony-Stimulating FactorG-CSFR (granulocyte-colony stimulating factor receptor)ibrutiniblabel-free quantitationleukemiaSWATH Proteomics

Identifiers

PMID32319217
PMCPMC7492401
OpenAlexW3016538306

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.