Evidence map›Paper›PMID 32318094›Full record

ArticleFrontiers in genetics2020

First Identification of Human Adenovirus Subtype 21a in China With MinION and Illumina Sequencers.

Fuqiang Ye, Yifang Han, Juanjuan Zhu, Peng Li, Qi Zhang, Yanfeng Lin, Taiwu Wang, Heng Lv, Changjun Wang, Chunhui Wang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Stable expression of shRNA for the control of recombinant adenovirus replication.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Fuqiang YeDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Yifang HanDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Juanjuan ZhuSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, China.
Peng LiCenter for Infectious Disease Control, Center for Disease Control and Prevention of People's Liberation Army of China, Beijing, China.
Qi ZhangDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Yanfeng LinCenter for Infectious Disease Control, Center for Disease Control and Prevention of People's Liberation Army of China, Beijing, China.
Taiwu WangDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Heng LvDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Changjun WangCenter for Infectious Disease Control, Center for Disease Control and Prevention of People's Liberation Army of China, Beijing, China.
Chunhui WangDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Jinhai ZhangDepartment of Disease Control and Prevention, Center for Disease Control and Prevention of Eastern Theater Command, Nanjing, China.
Nanjing Municipal Center for Disease Control And Prevention · CNBeijing Center for Disease Prevention and Control · CNChina Pharmaceutical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human adenoviruses (HAdVs) have been demonstrated to cause a diversity of diseases among children and adults. The circulation of human adenovirus type 21 (HAdV21) has been mainly documented within closed environments in several countries. Nonetheless, respiratory infections or outbreaks due to HAdV21 have never been reported in China. MinION and Illumina platforms were employed to identify the potential pathogen from a throat swab. Discrepancies between MinION and Illumina sequencing were validated and corrected via polymerase chain reaction (PCR). Genomic characterization and recombinant event detection were then performed. Among the 35,466 high-quality MinION reads, a total of 5,999 reads (16.91%) could be aligned to HAdV21 reference genomes (genome sizes ≈35.3 kb), among which 20 had a length of >30 kb. A genome sequence assembled from MinION reads was further classified as HAdV subtype 21a. Random downsampling revealed as few as 500 nanopore reads could cover ≥96.49% of current genome. Illumina sequencing displayed good consistency (pairwise nucleotide identity = 99.91%) with MinION sequencing but with 31 discrepancies that were further validated and confirmed by PCR coupled with Sanger sequencing. Restriction enzymes such as

Indexed as

adenovirus infectionhuman adenovirus subtype 21aIllumina sequencingMinION sequencingpathogen detection

Identifiers

PMID32318094
PMCPMC7155751
OpenAlexW3015892316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.