Evidence map›Paper›PMID 32317282›Full record

ArticleThe Journal of biological chemistry2020

The genome of a Bacteroidetes inhabitant of the human gut encodes a structurally distinct enoyl-acyl carrier protein reductase (FabI).

Christopher D Radka, Matthew W Frank, Jiangwei Yao, Jayaraman Seetharaman, Darcie J Miller, Charles O Rock

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Frontiers in nutrition · 2023
    Review
  4. Mining Fatty Acid Biosynthesis for New Antimicrobials.Annual review of microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Christopher D RadkaDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.ORCID 0000-0002-6037-7710
Matthew W FrankDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.ORCID 0000-0002-4914-1440
Jiangwei YaoDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.ORCID 0000-0001-7088-3468
Jayaraman SeetharamanDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.ORCID 0000-0003-3942-9640
Darcie J MillerDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.ORCID 0000-0003-1202-511X
Charles O RockDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee 38105 charles.rock@stjude.org.ORCID 0000-0001-8648-4189
St. Jude Children's Research Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
REGULATION OF LIPID METABOLISM IN E COLIR01GM034496 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI ROCK, CHARLES O · 1985 to 2022
$9.2M
REGULATION OF LIPID METABOLISM IN BACTERIAR37GM034496 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI ROCK, CHARLES O · 2001 to 2010
$5.7M
Phase II SER-CAT Optimization: Acquisition of a next generation area detectorS10RR028976 · NCRR · UNIVERSITY OF GEORGIA · PI WANG, BI-CHENG · 2010 to 2010
$1.5M
Acquition of a microdiffractometer for SER-CATS10RR025528 · NCRR · UNIVERSITY OF GEORGIA · PI ROSE, JOHN PATRICK · 2009 to 2009
$414k
NCI NIH HHS P30 CA021765NCRR NIH HHS S10 RR025528NCRR NIH HHS S10 RR028976NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM034496NIGMS NIH HHS R37 GM034496
6 · The paper itself

Abstract

Enoyl-acyl carrier protein reductase (FabI) catalyzes a rate-controlling step in bacterial fatty-acid synthesis and is a target for antibacterial drug development. A phylogenetic analysis shows that FabIs fall into four divergent clades. Members of clades 1-3 have been structurally and biochemically characterized, but the fourth clade, found in members of phylum Bacteroidetes, is uncharacterized. Here, we identified the unique structure and conformational changes that distinguish clade 4 FabIs.

Indexed as

Gastrointestinal MicrobiomeBacterial ProteinsBacteroidetesBinding SitesCrystallography, X-RayEnoyl-(Acyl-Carrier-Protein) Reductase (NADH)HumansNADBacterial ProteinsEnoyl-(Acyl-Carrier-Protein) Reductase (NADH)NADacyl carrier protein (ACP)Alistipes finegoldiibacteriaBacteroidetescrystal structureenoyl-acyl carrier protein reductaseFabIfatty acid biosynthesisfatty acid synthase (FAS)gut microbiomemicrobiomeNADH bindingstructural biologywater channel

Identifiers

PMID32317282
PMCPMC7261799
OpenAlexW3016969261

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.