Evidence map›Paper›PMID 32317019›Full record

ArticleMicrobiome2020

Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima.

Isis Guibert, Gael Lecellier, Gergely Torda, Xavier Pochon, Véronique Berteaux-Lecellier

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Microbiome, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Trophic niche partitioning in giant clams.Communications biology · 2025
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  8. Microbiome profile of the Antarctic clam Laternula elliptica.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  9. Article
  10. Article
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  12. Range expansion and first observation ofEcology and evolution · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 5 countries.

Isis GuibertSwire Institute of Marine Science, The University of Hong Kong, Hong Kong, SAR, China. guibert.isis@orange.fr.
Gael LecellierUMR250/9220 ENTROPIE IRD-CNRS-UR, Promenade Roger-Laroque, Sorbonne Université, Noumea Cedex, New Caledonia, France.
Gergely TordaARC, Centre of Excellence for Coral Reef Studies, James Cook University, QLD, Townsville, 4811, Australia.
Xavier PochonCoastal and Freshwater Group, Cawthron Institute, Private Bag 2, Nelson, 7042, New Zealand.
Véronique Berteaux-LecellierUMR250/9220 ENTROPIE IRD-CNRS-UR, Promenade Roger-Laroque, Sorbonne Université, Noumea Cedex, New Caledonia, France.
Australian Institute of Marine Science · AUCawthron Institute · NZCentre National de la Recherche Scientifique · FRGouvernement de la Nouvelle-Calédonie · NCSorbonne Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGiant clams and scleractinian (reef-building) corals are keystone species of coral reef ecosystems. The basis of their ecological success is a complex and fine-tuned symbiotic relationship with microbes. While the effect of environmental change on the composition of the coral microbiome has been heavily studied, we know very little about the composition and sensitivity of the microbiome associated with clams. Here, we explore the influence of increasing temperature on the microbial community (bacteria and dinoflagellates from the family Symbiodiniaceae) harbored by giant clams, maintained either in isolation or exposed to other reef species. We created artificial benthic assemblages using two coral species (Pocillopora damicornis and Acropora cytherea) and one giant clam species (Tridacna maxima) and studied the microbial community in the latter using metagenomics.

resultsOur results led to three major conclusions. First, the health status of giant clams depended on the composition of the benthic species assemblages. Second, we discovered distinct microbiotypes in the studied T. maxima population, one of which was disproportionately dominated by Vibrionaceae and directly linked to clam mortality. Third, neither the increase in water temperature nor the composition of the benthic assemblage had a significant effect on the composition of the Symbiodiniaceae and bacterial communities of T. maxima.

conclusionsAltogether, our results suggest that at least three microbiotypes naturally exist in the studied clam populations, regardless of water temperature. These microbiotypes plausibly provide similar functions to the clam host via alternate molecular pathways as well as microbiotype-specific functions. This redundancy in functions among microbiotypes together with their specificities provides hope that giant clam populations can tolerate some levels of environmental variation such as increased temperature. Importantly, the composition of the benthic assemblage could make clams susceptible to infections by Vibrionaceae, especially when water temperature increases. Video abstract.

Indexed as

AnthozoaBivalviaCoral ReefsDNA Barcoding, TaxonomicMicrobiotaAnimalsBacteriaDinoflagellidaSymbiosisTemperatureAssemblagesGiant clamsMicrobiomeMicrobiotypeSymbiodiniaceae

Identifiers

PMID32317019
PMCPMC7175534
OpenAlexW3016882801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.