Evidence map›Paper›PMID 32316560›Full record

ArticleCancers2020

Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases.

Jean-Marie Ravel, L Cristobal Monraz Gomez, Nicolas Sompairac, Laurence Calzone, Boris Zhivotovsky, Guido Kroemer, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 4 countries.

Jean-Marie RavelInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.ORCID 0000-0001-7038-7341
L Cristobal Monraz GomezInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.
Nicolas SompairacInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.ORCID 0000-0001-8759-2077
Laurence CalzoneInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.
Boris ZhivotovskyFaculty of Medicine, Lomonosov Moscow State University, 119991 Moscow, Russia.ORCID 0000-0002-2238-3482
Guido KroemerCentre de Recherche des Cordeliers, Equipe labellisée par la Ligue contre le cancer, Université de Paris, Sorbonne Université, Inserm U1138, Institut Universitaire de France, 75006 Paris, France.ORCID 0000-0002-9334-4405
Emmanuel BarillotInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.ORCID 0000-0003-2724-2002
Andrei ZinovyevInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.ORCID 0000-0002-9517-7284
Inna KupersteinInstitut Curie, PSL Research University, Mines Paris Tech, Inserm, U900, 75005 Paris, France.ORCID 0000-0001-8086-8915
Inserm · FRKarolinska University Hospital · SELomonosov Moscow State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The processes leading to, or avoiding cell death are widely studied, because of their frequent perturbation in various diseases. Cell death occurs in three highly interconnected steps: Initiation, signaling and execution. We used a systems biology approach to gather information about all known modes of regulated cell death (RCD). Based on the experimental data retrieved from literature by manual curation, we graphically depicted the biological processes involved in RCD in the form of a seamless comprehensive signaling network map. The molecular mechanisms of each RCD mode are represented in detail. The RCD network map is divided into 26 functional modules that can be visualized contextually in the whole seamless network, as well as in individual diagrams. The resource is freely available and accessible via several web platforms for map navigation, data integration, and analysis. The RCD network map was employed for interpreting the functional differences in cell death regulation between Alzheimer's disease and non-small cell lung cancer based on gene expression data that allowed emphasizing the molecular mechanisms underlying the inverse comorbidity between the two pathologies. In addition, the map was used for the analysis of genomic and transcriptomic data from ovarian cancer patients that provided RCD map-based signatures of four distinct tumor subtypes and highlighted the difference in regulations of cell death molecular mechanisms.

Indexed as

Alzheimer’s diseasebiocurationcomprehensive mapdata visualizationlung cancermodule activityNaviCellregulated cell deathsignaling networksurvival

Identifiers

PMID32316560
PMCPMC7226067
OpenAlexW3016844832

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.