Evidence map›Paper›PMID 32316423›Full record

ArticleMetabolites2020

Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics.

Ellen Kuang, Matthew Marney, Daniel Cuevas, Robert A Edwards, Erica M Forsberg

Abstract read
In one paragraph

Article in Metabolites, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ellen KuangDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182, USA.
Matthew MarneyDepartment of Biomedical Informatics, San Diego State University, San Diego, CA 92182, USA.
Daniel CuevasViral Information Institute, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0003-2326-3199
Robert A EdwardsDepartment of Biomedical Informatics, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0001-8383-8949
Erica M ForsbergDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182, USA.ORCID 0000-0001-5190-1501

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomics-based metabolic models of microorganisms currently have no easy way of corroborating predicted biomass with the actual metabolites being produced. This study uses untargeted mass spectrometry-based metabolomics data to generate a list of accurate metabolite masses produced from the human commensal bacteria

Indexed as

bioinformaticsflux balance analysismass spectrometrymetabolomicsmicrobiomemultiomics

Identifiers

PMID32316423
PMCPMC7240944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.