Evidence map›Paper›PMID 32313551›Full record

ArticleBiotechnology for biofuels2020

Succession of physiological stages hallmarks the transcriptomic response of the fungus

Jolanda M van Munster, Paul Daly, Martin J Blythe, Roger Ibbett, Matt Kokolski, Sanyasi Gaddipati, Erika Lindquist, Vasanth R Singan, Kerrie W Barry, Anna Lipzen and 11 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biotechnology for biofuels, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 6 countries.

Jolanda M van Munster *1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.ORCID 0000-0003-0412-7001
Paul Daly *1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.
Martin J Blythe4Deep Seq, Faculty of Medicine and Health Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH UK.
Roger Ibbett5School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD UK.
Matt Kokolski1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.
Sanyasi Gaddipati5School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD UK.
Erika Lindquist6US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94598 USA.
Vasanth R Singan6US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94598 USA.
Kerrie W Barry6US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94598 USA.
Anna Lipzen6US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94598 USA.
Chew Yee Ngan6US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94598 USA.
Christopher J Petzold7Joint BioEnergy Institute, Emeryville, CA 94608 USA.
Leanne Jade G Chan7Joint BioEnergy Institute, Emeryville, CA 94608 USA.
Mikko Arvas8VTT Technical Research Centre of Finland, Tietotie 2, P.O. Box FI-1000, 02044 VTT Espoo, Finland.
Roxane Raulo1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.
Steven T Pullan1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.
Stéphane Delmas1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.
Igor V Grigoriev6US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94598 USA.
Gregory A Tucker5School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD UK.
Blake A Simmons7Joint BioEnergy Institute, Emeryville, CA 94608 USA.
David B Archer1School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD UK.
University of Nottingham · GBLawrence Berkeley National Laboratory · USJoint BioEnergy Institute · USCentre National de la Recherche Scientifique · FRTieto (Finland) · FI

Funding

Biotechnology and Biological Sciences Research Council BB/G01616X/1Biotechnology and Biological Sciences Research Council BB/K01434X/1
6 · The paper itself

Abstract

backgroundUnderstanding how fungi degrade lignocellulose is a cornerstone of improving renewables-based biotechnology, in particular for the production of hydrolytic enzymes. Considerable progress has been made in investigating fungal degradation during time-points where CAZyme expression peaks. However, a robust understanding of the fungal survival strategies over its life time on lignocellulose is thereby missed. Here we aimed to uncover the physiological responses of the biotechnological workhorse and enzyme producer

resultsWe analysed the response of

conclusionIn this study, which includes the first transcriptional response of Aspergilli to

Indexed as

Aspergillus nigerCAZymesfarAFatty acids beta-oxidationLignocelluloseMetabolismPretreatmentSecondary metabolismSystem analysis

Identifiers

PMID32313551
PMCPMC7155255
OpenAlexW3017079629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.