Evidence map›Paper›PMID 32312748›Full record

ArticleThe Journal of biological chemistry2020

The gene for the lysosomal protein LAMP3 is a direct target of the transcription factor ATF4.

Thomas D Burton, Anthony O Fedele, Jianling Xie, Lauren Y Sandeman, Christopher G Proud

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas D BurtonHopwood Centre for Neurobiology, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), P. O. Box 11060, Adelaide, South Australia 5001, Australia.
Anthony O FedeleHopwood Centre for Neurobiology, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), P. O. Box 11060, Adelaide, South Australia 5001, Australia.
Jianling XieCell Signalling & Gene Regulation, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), P. O. Box 11060, Adelaide, South Australia 5001, Australia.
Lauren Y SandemanCell Signalling & Gene Regulation, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), P. O. Box 11060, Adelaide, South Australia 5001, Australia.
Christopher G ProudHopwood Centre for Neurobiology, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), P. O. Box 11060, Adelaide, South Australia 5001, Australia; Department of Molecular and Biomedical Science, School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia. Electronic address: christopher.proud@sahmri.com.
South Australian Health and Medical Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy and lysosomal activities play a key role in the cell by initiating and carrying out the degradation of misfolded proteins. Transcription factor EB (TFEB) functions as a master controller of lysosomal biogenesis and function during lysosomal stress, controlling most but, importantly, not all lysosomal genes. Here, we sought to better understand the regulation of lysosomal genes whose expression does not appear to be controlled by TFEB. Sixteen of these genes were screened for transactivation in response to diverse cellular insults. mRNA levels for lysosomal-associated membrane protein 3 (

Indexed as

Response ElementsTranscription, GeneticUp-RegulationA549 CellsActivating Transcription Factor 4HumansLysosomal-Associated Membrane Protein 3Lysosomal Membrane ProteinsNeoplasm ProteinsRNA, MessengerActivating Transcription Factor 4ATF4 protein, humanLAMP3 protein, humanLysosomal-Associated Membrane Protein 3Lysosomal Membrane ProteinsNeoplasm ProteinsRNA, Messengeractivating transcription factor 4 (ATF4)autophagycell stresseukaryotic initiation factor 2 (eIF2)lysosomal-associated membrane protein 3 (LAMP3)lysosomemammalian target of rapamycin complex 1 (mTORC1)protein misfoldingtranscription factor EB (TFEB)unfolded protein response (UPR)

Identifiers

PMID32312748
PMCPMC7247307
OpenAlexW3016730471

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.