Evidence map›Paper›PMID 32311850›Full record

ArticleAnnals of laboratory medicine2020

Clonal Distribution of Clindamycin-Resistant Erythromycin-Susceptible (CRES) Streptococcus agalactiae in Korea Based on Whole Genome Sequences.

Takashi Takahashi, Takahiro Maeda, Seungjun Lee, Dong-Hyun Lee, Sunjoo Kim

Abstract read
In one paragraph

Article in Annals of laboratory medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Comparing Genomic Characteristics ofAnnals of laboratory medicine · 2022
    Article
  7. Article
  8. Recent Epidemiological Changes in Group BAnnals of laboratory medicine · 2021
    Article
  9. Article
  10. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Takashi TakahashiLaboratory of Infectious Diseases, Graduate School of Infection Control Sciences & Kitasato Institute for Life Sciences, Kitasato University, Tokyo, Japan.ORCID 0000-0003-4131-2062
Takahiro MaedaLaboratory of Infectious Diseases, Graduate School of Infection Control Sciences & Kitasato Institute for Life Sciences, Kitasato University, Tokyo, Japan.ORCID 0000-0003-0899-2860
Seungjun LeeDepartment of Laboratory Medicine, Gyeongsang National University Changwon Hospital, Changwon, Korea.ORCID 0000-0002-3377-4833
Dong-Hyun LeeDepartment of Laboratory Medicine, Gyeongsang National University Hospital, Jinju, Korea.ORCID 0000-0001-5880-4528
Sunjoo KimDepartment of Laboratory Medicine, Gyeongsang National University Changwon Hospital, Changwon, Korea.ORCID 0000-0001-8099-8891

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundThe clindamycin-resistant erythromycin-susceptible (CRES) phenotype is rare in Streptococcus agalactiae (group B streptococci). We aimed to determine the molecular characteristics of CRES S. agalactiae using whole genome sequencing (WGS).

methodsSixty-six S. agalactiae isolates obtained from blood (N=26), cerebrospinal fluid (N=10), urine (N=17), and vaginal discharge (N=13) between 2010 and 2017 in Korea were subjected to WGS. Based on the WGS data, we analyzed antimicrobial resistance (AMR) determinants, sequence types (STs), capsular polysaccharide (CPS) genotypes, and virulence gene profiles, and constructed a phylogenetic tree. We included the clindamycin-susceptible erythromycin-resistant (CSER) phenotype for comparison.

resultsWe identified seven CRES S. agalactiae isolates from urine (N=5) and vaginal discharge (N=2) collected between 2010 and 2011. All CRES isolates harbored AMR determinants of lnu(B), lsa(E), and aac(6')-aph(2″), revealed ST19 and CPS genotype III, and had a virulence gene profile of rib-lmb-cylE. Phylogenetic tree analysis revealed that all CRES isolates belonged to the same cluster, suggesting a clonal distribution. In contrast, seven CSER isolates showed a diverse distribution and clustered separately from the CRES isolates.

conclusionsCRES isolates collected between 2010 and 2011 showed a unique cluster with ST19 and CPS genotype III in Korea. This is the first report on WGS-based characteristics of S. agalactiae in Korea.

Indexed as

AdolescentAdultAgedAged, 80 and overAnti-Bacterial AgentsClindamycinDrug Resistance, BacterialFemaleGenotypeHumansInfant, NewbornMaleMicrobial Sensitivity TestsMiddle AgedPhylogenyRepublic of KoreaAnti-Bacterial AgentsClindamycinAntimicrobial resistanceClonal distributionCRES (clindamycin-resistant erythromycin-susceptible)Group B streptococciSequence typesStreptococcus agalactiaeWhole genome sequencing

Identifiers

PMID32311850
PMCPMC7169627

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.