Evidence map›Paper›PMID 32311431›Full record

ArticleMicrobial pathogenesis2020

Etiology and genetic evolution of canine coronavirus circulating in five provinces of China, during 2018-2019.

Hai-Jian He, Wenyan Zhang, Jiawei Liang, Meng Lu, Ruyi Wang, Gairu Li, Jia-Wei He, Jun Chen, Jun Chen, Gang Xing and 1 more

Abstract read
In one paragraph

Article in Microbial pathogenesis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  16. Isolation of a Novel Recombinant Canine Coronavirus From a Visitor to Haiti: Further Evidence of Transmission of Coronaviruses of Zoonotic Origin to Humans.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Article
  17. Review
  18. Identification of a canine coronavirus in Australian racing Greyhounds.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hai-Jian HeAgricultural College, Jinhua Poletecnic, Jinhua, 321007, China. Electronic address: hehaijian660108@126.com.
Wenyan ZhangCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China. Electronic address: Wenyan__Zhang@163.com.
Jiawei LiangCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Meng LuCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Ruyi WangCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Gairu LiCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Jia-Wei HeKangmei Pet Hospital, Jinhua, 321000, Zhejiang, China.
Jun ChenBojue Pet Hospital, Jinhua, 321000, Zhejiang, China.
Jun ChenSaina Animal Hospital, Jinhua, 321000, Zhejiang, China.
Gang XingInstitute of Preventive Veterinary Sciences, Zhejiang University, China.
Ye ChenCollege of Animal Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. Electronic address: fafuchenye@163.om.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As the outbreaks of COVID-19 in worldwide, coronavirus has once again caught the attention of people. Canine coronavirus is widespread among dog population, and sometimes causes even fatal cases. Here, to characterize the prevalence and evolution of current circulating canine coronavirus (CCoV) strains in China, we collected 213 fecal samples from diarrheic pet dogs between 2018 and 2019. Of the 213 samples, we found 51 (23.94%) were positive for CCoV. Co-infection with canine parvovirus (CPV), canine astrovirus (CaAstV), canine kobuvirus (CaKV), Torque teno canis virus (TTCaV) were ubiquitous existed. Mixed infection of different CCoV subtypes exists extensively. Considering the limited sequences data in recent years, we sequenced 7 nearly complete genomes and 10 complete spike gene. Phylogenetic analysis of spike gene revealed a new subtype CCoV-II Variant and CCoV-IIa was the most prevalent subtype currently circulating. Moreover, we identified strain B906_ZJ_2019 shared 93.24% nucleotide identifies with previous strain A76, and both of them clustered with CCoV-II Variant, which were not well clustered with the known subtypes. Recombination analysis of B906_ZJ_2019 indicated that strain B906_ZJ_2019 may a recombinant variant between CCoV-I and CCoV-II, which is consistent with strain A76. Furthermore, amino acid variations widely existed among current CCoV-IIa strains circulating in China and the classic CCoV-IIa strains, in spite of the unknown functions. In a word, we report a useful information as to the etiology and evolution of canine coronavirus in China based on the available sequences, which is urgent for the devise of future effective disease prevention and control strategies.

Indexed as

AnimalsBase SequenceChinaCoronavirus, CanineCoronavirus InfectionsDNA, ViralDog DiseasesDogsFecesGenome, ViralPhylogenySequence Analysis, DNASpike Glycoprotein, CoronavirusDNA, ViralSpike Glycoprotein, CoronavirusCanine coronavirusEtiologyEvolutionPhylogenetic analysisRecombination

Identifiers

PMID32311431
PMCPMC7165111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.